Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_O14
(311 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,853... 28 1.8
03_06_0259 + 32712976-32714335,32714454-32714587,32714904-327151... 27 3.1
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 27 4.1
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115... 27 4.1
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898... 26 7.2
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647... 26 7.2
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 26 7.2
01_06_1642 + 38857326-38857581,38858577-38858818,38859001-388600... 26 7.2
01_06_0877 + 32662978-32663179,32663718-32663951,32664080-326641... 26 7.2
11_06_0166 + 20851451-20854000 25 9.5
09_04_0439 - 17594131-17594271,17595018-17595100,17595199-175953... 25 9.5
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51... 25 9.5
>07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,
8530533-8530878,8530964-8531101,8531197-8531322,
8531422-8531634,8531721-8531863,8531891-8532009,
8532099-8532295,8532379-8532729,8532811-8533395
Length = 1143
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 178 WFLTKFVTTFLPNLFEMRVNGVII 249
WF++ F+ F+ + EMR +GV I
Sbjct: 957 WFMSLFICIFVTGILEMRWSGVAI 980
>03_06_0259 +
32712976-32714335,32714454-32714587,32714904-32715144,
32715254-32715462,32715522-32715583,32715690-32715801,
32715916-32716208,32716400-32716520
Length = 843
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 215 LGRNVVTNFV-RNHSNGGIPGENLPFDIHNR 126
LGR VVT + RN GG+PGE F + R
Sbjct: 244 LGRKVVTVVLSRNRFTGGLPGEITSFYLLER 274
>07_01_0766 -
5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 178 WFLTKFVTTFLPNLFEMRVNGV 243
WF++ F++ F + EMR +GV
Sbjct: 901 WFISLFISIFATGILEMRWSGV 922
>04_01_0112 +
1151242-1151272,1151722-1151928,1151996-1152318,
1152552-1153793
Length = 600
Score = 26.6 bits (56), Expect = 4.1
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = -1
Query: 305 NWNFCFLL*YLLENRRNVKMITPLTRISNKLGRNVVTNFVRNHSNGGIPGENLPF 141
+WN L LEN R+ ++PL S+ L V N NH +G IP L F
Sbjct: 277 HWNLGSLKHLSLENNRSSGWLSPLLSNSSNLKTLNVRN---NHLSGIIPDGLLSF 328
>07_03_0123 -
13688562-13689146,13689233-13689583,13689665-13689861,
13689954-13690072,13690103-13690245,13690332-13690544,
13690649-13690774,13690891-13691028,13691109-13691454,
13691532-13691798,13691939-13691983,13692148-13692349,
13692405-13692507,13692599-13692810,13692891-13693113,
13693211-13693291
Length = 1116
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 178 WFLTKFVTTFLPNLFEMRVNGV 243
WF++ F+ F + EMR +GV
Sbjct: 930 WFMSLFICIFATGILEMRWSGV 951
>03_06_0596 +
34964109-34964189,34964286-34964481,34964567-34964775,
34964868-34964970,34965053-34965227,34965617-34965883,
34965966-34966311,34966396-34966533,34966645-34966770,
34966866-34967078,34967171-34967462,34967559-34967755,
34967844-34968194,34968290-34968874
Length = 1092
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 178 WFLTKFVTTFLPNLFEMRVNGV 243
WF++ F+ F + EMR +GV
Sbjct: 906 WFMSLFICIFATGILEMRWSGV 927
>03_06_0389 -
33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 178 WFLTKFVTTFLPNLFEMRVNGV 243
WF++ F++ F + EMR +GV
Sbjct: 887 WFISLFLSIFATGILEMRWSGV 908
>01_06_1642 +
38857326-38857581,38858577-38858818,38859001-38860004,
38860170-38860587,38860673-38860789
Length = 678
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -1
Query: 224 SNKLGRNVVTNFVRNHSNGGIPGENLPFDIHNRYKL 117
S+KL R++ + NH + G+P D + +Y +
Sbjct: 115 SSKLPRSIFYDLRGNHDSFGVPSPGGDHDFYQKYSI 150
>01_06_0877 +
32662978-32663179,32663718-32663951,32664080-32664143,
32664250-32664379,32664483-32664624,32664806-32665063,
32665168-32665252,32665609-32665711,32666281-32666406,
32666476-32666589,32666769-32666887,32666993-32667080,
32667154-32667246,32667325-32667414,32667522-32667641,
32667782-32667877
Length = 687
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 175 EWFLTKFVTTFLPNLFEMRVNGVIIFTFLRFSSRYHSKKQKF 300
EW + K + N R G+ +FT LRF+ S ++F
Sbjct: 633 EWSVDKVLEVINKNCRSWRGEGMKMFTQLRFTYEQESHPEEF 674
>11_06_0166 + 20851451-20854000
Length = 849
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 251 KMITPLTRISNKLGRNVVTNFVRNHSNGGIPGENLPFDIHNRY 123
++I L + ++LGR VT+ VR+ LPF + R+
Sbjct: 230 RLIDLLEIVGSRLGRRAVTDAVRSWRAAAAVHPELPFARNERF 272
>09_04_0439 -
17594131-17594271,17595018-17595100,17595199-17595355,
17595438-17595576,17595668-17595720,17596150-17596257,
17596345-17596413,17596505-17596570,17596651-17596794,
17597372-17597455,17597539-17597637,17597753-17597875,
17598283-17598831
Length = 604
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = -1
Query: 185 RNHSNGGIPG--ENLPFDIHNRYKLTLYXXLYAGAGLSAPXXXTRHQLLKK-EXKLQRAF 15
R NG G E P + RY LY G + + L++ E ++QRAF
Sbjct: 66 RPGQNGSTRGAVEKDPIKLWERYVEWLYQHKELGLFVDVSRMGFTEEFLRRMEPRMQRAF 125
Query: 14 ACLR 3
A +R
Sbjct: 126 AAMR 129
>02_01_0073 -
509377-509425,510200-510270,510420-510539,510684-510769,
510843-510915,510996-511718,513752-514081,514124-514210,
514494-515250,515336-515399,515477-515609,515702-515801,
515952-516088,516195-516341,516428-516478,517083-517148
Length = 997
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 110 TMSACNGCECRRVDSRQEYRR*NGFSRNSLPHFCPICLR 226
T + C+ +C+R DS + R NG +N +C C++
Sbjct: 96 TSTMCH--QCQRKDSGRVVRCRNGAEKNRRHRYCVKCIK 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,973,739
Number of Sequences: 37544
Number of extensions: 142411
Number of successful extensions: 293
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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