Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_O14
         (311 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.21 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.21 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   1.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   2.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   6.0  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   8.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.21
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 154  SPGIPPLEWFLTKFVTTFLPNLFEMRVNGVIIFTF 258
            +PGIPP   FL+   TT +  L     NG  I  F
Sbjct: 1498 APGIPPAATFLSPNSTTLVLRLHVWPDNGCPILYF 1532


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.21
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 154  SPGIPPLEWFLTKFVTTFLPNLFEMRVNGVIIFTF 258
            +PGIPP   FL+   TT +  L     NG  I  F
Sbjct: 1494 APGIPPAATFLSPNSTTLVLRLHVWPDNGCPILYF 1528


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 145 GRFSPGIPPLEWFLTKFVTTFLPNLFEMRVNGVIIFTF 258
           GRF P     E FLT     +L +  E+R+    IFTF
Sbjct: 186 GRFVP-----EGFLTSCSFDYLTDTNEIRIFVATIFTF 218


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = -3

Query: 189 REKPF*RRYSWRESTLRHSQPLQA--DIVXXPICGRWTISTXAXHPAP 52
           RE P  R ++  E  +    PL A  +    P  G W +S  A  P P
Sbjct: 350 REHPS-RNFTMSEDGMIEVIPLSAIPEPSKNPAMGHWQMSCVACSPPP 396


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -1

Query: 266  NRRNVKMITPLTRISNKLGRNVVTNFVRNHSNGGIPGENLPFD 138
            N +     + + +  NK+G   ++   R H+  G+P E  P D
Sbjct: 1046 NLKTYTQYSVVVQAFNKVGSGPMSEERRQHTAEGVP-EQPPHD 1087


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = +2

Query: 95  HIGXNTMSACNGCECRRVDSRQEYR 169
           H G ++   C G   R +  + +YR
Sbjct: 78  HYGVHSCEGCKGFFRRSIQQKIQYR 102


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 179 GFSRNSLPHF 208
           GF + +LPHF
Sbjct: 262 GFRKRTLPHF 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,622
Number of Sequences: 438
Number of extensions: 1547
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)