Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_O09
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    28   1.9  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   3.2  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    27   3.2  

>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 397 HNDSKEVSLQYILFTYKS 344
           HND KE+ LQY+  TY++
Sbjct: 433 HNDPKEIYLQYLAATYET 450


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 140 INAIQNMYENKVTCPVLSSAGEPRLIYT*-KPILV-DQQLRATVRLDERSGIRGKL 301
           I    N   NK+ C +   + +P L +   KP +  D  L  TVR+ ERS IR  +
Sbjct: 122 IEESDNASNNKL-CTLFKKSKQPNLDFLQIKPFMFWDSSLNETVRISERSIIRDSI 176


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 582 SPTAGLD*LLLTTYHCLPKTCIVNLTATY 668
           SP  G   L   T H L K C+VN+   Y
Sbjct: 503 SPFVGFSILTAATIHMLLKFCVVNIDQNY 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,310
Number of Sequences: 5004
Number of extensions: 59829
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)