Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_O09
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73969-21|CAI46568.2|  272|Caenorhabditis elegans Hypothetical p...    29   5.4  
Z70783-12|CAI46596.2|  272|Caenorhabditis elegans Hypothetical p...    29   5.4  
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    29   5.4  
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ...    29   5.4  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    29   5.4  

>Z73969-21|CAI46568.2|  272|Caenorhabditis elegans Hypothetical
           protein ZK856.14 protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 184 WTSYFVFIHVLYSINLINE*VLALSIYFISI 92
           W   F  ++ ++S N+I+  V+ALSI+FI +
Sbjct: 150 WGMAFSVLNQIHSFNIIDAFVVALSIFFICL 180


>Z70783-12|CAI46596.2|  272|Caenorhabditis elegans Hypothetical
           protein ZK856.14 protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 184 WTSYFVFIHVLYSINLINE*VLALSIYFISI 92
           W   F  ++ ++S N+I+  V+ALSI+FI +
Sbjct: 150 WGMAFSVLNQIHSFNIIDAFVVALSIFFICL 180


>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1651

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +2

Query: 122 DLLVYKINAIQNMYENKVTCPVLSSAGEPRLIYT*KPILVDQQLRATVRLDERSGIRGKL 301
           D LV +  +    YE  +    L++AG    +Y  + I++++Q   T+R       R   
Sbjct: 521 DKLVQQFESASTRYEKVLALKTLANAGLDLSVYPLEKIILNEQHETTIRTQAIESFRRLR 580

Query: 302 PQM 310
            QM
Sbjct: 581 TQM 583


>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           a protein.
          Length = 1650

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +2

Query: 122 DLLVYKINAIQNMYENKVTCPVLSSAGEPRLIYT*KPILVDQQLRATVRLDERSGIRGKL 301
           D LV +  +    YE  +    L++AG    +Y  + I++++Q   T+R       R   
Sbjct: 521 DKLVQQFESASTRYEKVLALKTLANAGLDLSVYPLEKIILNEQHETTIRTQAIESFRRLR 580

Query: 302 PQM 310
            QM
Sbjct: 581 TQM 583


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           c protein.
          Length = 1651

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +2

Query: 122 DLLVYKINAIQNMYENKVTCPVLSSAGEPRLIYT*KPILVDQQLRATVRLDERSGIRGKL 301
           D LV +  +    YE  +    L++AG    +Y  + I++++Q   T+R       R   
Sbjct: 521 DKLVQQFESASTRYEKVLALKTLANAGLDLSVYPLEKIILNEQHETTIRTQAIESFRRLR 580

Query: 302 PQM 310
            QM
Sbjct: 581 TQM 583


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,780,991
Number of Sequences: 27780
Number of extensions: 322990
Number of successful extensions: 614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)