Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_O07
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    26   1.5  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    25   3.4  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    24   4.5  
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    24   4.5  
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    24   4.5  

>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 260 NKLPFCDDQEF*FAGQQHIRC--*CFSTRRD 174
           N  PFC D  +    QQH +C   C  +R+D
Sbjct: 148 NSWPFCLDHSYILEDQQHNKCLVHCNQSRKD 178


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 167 CGGRNISLYLVARKEGSPTARSXKARIGEDSS 72
           C G  ++ + V +KEG  ++ S      EDSS
Sbjct: 300 CSGTELAFWPVDQKEGDESSSSDNLDSDEDSS 331


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 1    DVTQACTRKXYFANKIIFPLHYVLLLSSPIRAL-XLRAVGEPSFLATK 141
            D  +A     YFA+  + P+H ++ L   I A   L+     SFL  K
Sbjct: 1067 DTKRALELSYYFASADLQPMHSIIALRLAINASHKLKNYKSASFLGNK 1114


>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 180 ARWRLWRSEHFSLLGGKKGR 121
           A +R+W   H+ +L G KG+
Sbjct: 107 APFRVWYETHYGILMGSKGK 126


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 180 ARWRLWRSEHFSLLGGKKGR 121
           A +R+W   H+ +L G KG+
Sbjct: 107 APFRVWYETHYGILMGSKGK 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,257,392
Number of Sequences: 5004
Number of extensions: 20578
Number of successful extensions: 42
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)