Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_O07
         (308 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.28 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   1.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   1.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   2.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   2.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        20   5.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   5.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   5.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   5.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   7.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 0.28
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +3

Query: 3   RNTSVYT*VLFCEQNY----FSAALCSATIFADSRLXAPCGGGTFLS 131
           RN + Y   + CE+ Y    F+  L   T+F    L  PC G +FLS
Sbjct: 211 RNEAFY---ICCEEPYPDIVFNITLRRKTLFYTVNLIIPCVGISFLS 254


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +3

Query: 3   RNTSVYT*VLFCEQNY----FSAALCSATIFADSRLXAPCGGGTFLS 131
           RN   YT    C++ Y    F+  +   T+F    L  PC G +FL+
Sbjct: 215 RNEKFYT---CCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLT 258


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 51  FSAALCSATIFADSRLXAPCGGGTFLS 131
           F+  +   T+F    L  PC G TFL+
Sbjct: 241 FNITMRRKTLFYTVNLIIPCVGITFLT 267


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +3

Query: 3   RNTSVYT*VLFCEQNY----FSAALCSATIFADSRLXAPCGGGTFLS 131
           RN   YT    C++ Y    F+  +   T+F    +  PC G +FL+
Sbjct: 219 RNEKFYT---CCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLT 262


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +3

Query: 3   RNTSVYT*VLFCEQNY----FSAALCSATIFADSRLXAPCGGGTFLS 131
           RN   YT    C++ Y    F+  +   T+F    +  PC G +FL+
Sbjct: 219 RNEKFYT---CCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLT 262


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 177 RWRLWRSEHFSLLGGK 130
           RW L   E   L+GG+
Sbjct: 261 RWNLTSGERVGLVGGR 276


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 165 WRSEHFSLLGG 133
           W SEHF   GG
Sbjct: 333 WNSEHFFEYGG 343


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 48  YFSAALCSATIFADSRLXAPCGGGTFLS 131
           +F+  L   T+F    L  PC   ++LS
Sbjct: 226 FFNITLRRKTLFYTVNLIVPCVSISYLS 253


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -2

Query: 307 PCKVFHHNHCRFSLPQINCH 248
           P    HH+H   +L +  CH
Sbjct: 281 PSLASHHSHLSSALGRSACH 300


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 223 N*NSWSSQNGNLFVATKNDNDCD 291
           N N+ ++ NGN   A+ N+N+ D
Sbjct: 249 NNNNGANDNGNGNGASNNNNNGD 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,376
Number of Sequences: 438
Number of extensions: 1705
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)