Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_O05
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0155 + 20373083-20373385,20374185-20374224,20374289-20374407     29   2.9  
01_01_0747 - 5773771-5773863,5773960-5774061,5774527-5774610,577...    27   6.6  
06_03_0397 + 20370146-20370256,20371223-20371312,20371411-203714...    27   8.8  
06_01_0616 + 4467439-4467733,4469232-4469294,4469840-4471176,447...    27   8.8  

>02_04_0155 + 20373083-20373385,20374185-20374224,20374289-20374407
          Length = 153

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 73  DKSHRQPTYN*LKYNIHMNFLRLFLW*CHKSMLEFT*KASLKIKMTLMW 219
           D    + T+N   YNI M  L L +   H  ++E      +K+KM L+W
Sbjct: 75  DCEDEEVTFN--VYNIDMEILELII--THSDLVELKALPLIKVKMVLLW 119


>01_01_0747 -
           5773771-5773863,5773960-5774061,5774527-5774610,
           5774777-5774872,5774950-5775000,5775105-5775245,
           5775704-5775760,5775845-5775919,5776005-5776277,
           5776371-5776430,5776969-5777061,5777227-5777298
          Length = 398

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 294 QTISLSICRGYLVALFRTYAYYKTIPHKCH 205
           Q + L   + Y+  LFR  AY  T+P  CH
Sbjct: 153 QRMPLIYVKLYIYQLFRGLAYIHTVPGVCH 182


>06_03_0397 +
           20370146-20370256,20371223-20371312,20371411-20371470,
           20371553-20371825,20371917-20371991,20372074-20372130,
           20372820-20372960,20373066-20373116,20373194-20373289,
           20373482-20373565,20375739-20375840,20376260-20376331
          Length = 403

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 294 QTISLSICRGYLVALFRTYAYYKTIPHKCHFNLE 193
           Q + L   + Y+  +FR  AY  T+P  CH +++
Sbjct: 165 QRMPLIYVKLYMYQIFRGLAYIHTVPGVCHRDIK 198


>06_01_0616 +
           4467439-4467733,4469232-4469294,4469840-4471176,
           4472719-4473086,4473526-4473559,4473978-4474421
          Length = 846

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 278 AFVEVTSWLYLGLMHIIKLYHISVILILRLAFQVNSSI 165
           A ++V SW    L+H   LY I ++  L  AFQV   +
Sbjct: 191 AILDVFSWRAAVLLHEDSLYGIGILPALVHAFQVQGQL 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,225,956
Number of Sequences: 37544
Number of extensions: 200193
Number of successful extensions: 301
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)