Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_O05
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.4  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   4.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   5.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.4  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   9.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 209  VILILRLAFQVNSSIDLWHYHKNNLK 132
            +++I+ LAF    S+  W Y K  L+
Sbjct: 1008 LLVIIVLAFVFRESVGAWAYSKYGLR 1033


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 297 YQTISLSICRGYLVALFRTYAYYKTIPHKCHFNLETRL 184
           Y+     IC      LF+  A+ K IPH     LE ++
Sbjct: 227 YENAVSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQV 264


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 297 YQTISLSICRGYLVALFRTYAYYKTIPHKCHFNLETRL 184
           Y+     IC      LF+  A+ K IPH     LE ++
Sbjct: 227 YENAVSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQV 264


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 95  VGCRCDLSLKFYICVIL*MR 36
           V   CD++L F +C++  MR
Sbjct: 128 VNDECDVALSFKLCMLKAMR 147


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -3

Query: 233 IIKLYHISVILILRLAFQVNSSIDLWHYHKNNLKKFMCMLYFS 105
           I   +H++V+      F  N+   +    K N K+F C  Y S
Sbjct: 141 IAPTFHLNVLKSFIDLFNANARSVVEKMRKENGKEFDCHNYMS 183


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 506 EFQYLIKAVLFMNYFISIQFYFNAELLDISF 414
           E +  +  V+F+ + I  Q  FNAE  D  F
Sbjct: 450 ELEKALHNVMFIQHHIQRQDEFNAEDQDWGF 480


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 332 LPLHCKFIANNGTKQ 288
           LP  C F  NNG ++
Sbjct: 36  LPTECVFCRNNGEEE 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,584
Number of Sequences: 438
Number of extensions: 2995
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)