Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_O04
(740 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 40 0.002
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 40 0.002
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 40 0.002
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 40 0.002
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 39 0.004
Z75955-7|CAB00121.1| 550|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81556-6|CAB04523.2| 421|Caenorhabditis elegans Hypothetical pr... 28 8.0
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical protein
F20B4.7 protein.
Length = 891
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Frame = -3
Query: 705 WTTKVADERRLHAAEMRMLRWMCGVT----RMDRIRNEYVRGSLKVAPXTEKLRSARLGW 538
WT A R+ + R + G+T R + E +R V ++ +LGW
Sbjct: 755 WTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGW 814
Query: 537 YGHVMRRXENEVVKRVLTMNVERF-RXRGRPXKKWMDCVKDDMGRRGVSEEMV 382
GHV RR + + + R GRP +W D ++ ++ R E++
Sbjct: 815 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 867
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Frame = -3
Query: 705 WTTKVADERRLHAAEMRMLRWMCGVT----RMDRIRNEYVRGSLKVAPXTEKLRSARLGW 538
WT A R+ + R + G+T R + E +R V ++ +LGW
Sbjct: 930 WTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGW 989
Query: 537 YGHVMRRXENEVVKRVLTMNVERF-RXRGRPXKKWMDCVKDDMGRRGVSEEMV 382
GHV RR + + + R GRP +W D ++ ++ R E++
Sbjct: 990 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 1042
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Frame = -3
Query: 705 WTTKVADERRLHAAEMRMLRWMCGVT----RMDRIRNEYVRGSLKVAPXTEKLRSARLGW 538
WT A R+ + R + G+T R + E +R V ++ +LGW
Sbjct: 669 WTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGW 728
Query: 537 YGHVMRRXENEVVKRVLTMNVERF-RXRGRPXKKWMDCVKDDMGRRGVSEEMV 382
GHV RR + + + R GRP +W D ++ ++ R E++
Sbjct: 729 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 781
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Frame = -3
Query: 705 WTTKVADERRLHAAEMRMLRWMCGVT----RMDRIRNEYVRGSLKVAPXTEKLRSARLGW 538
WT A R+ + R + G+T R + E +R V ++ +LGW
Sbjct: 281 WTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRKMSLVRDPLNFVKKRKLGW 340
Query: 537 YGHVMRRXENEVVKRVLTMNVERF-RXRGRPXKKWMDCVKDDMGRRGVSEEMV 382
GHV RR + + + R GRP +W D ++ ++ R E++
Sbjct: 341 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 393
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 38.7 bits (86), Expect = 0.004
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Frame = -3
Query: 705 WT-TKVADER-RL-HAAEMRMLRWMCGVTRMDR-IRNEYVRGSLKVAPXTEKLRSARLGW 538
WT TK ER R+ HAA R L + + +R I E VR K+ ++ +LGW
Sbjct: 66 WTFTKELVERVRVTHAALERKLVGLTLTEQRERNIHREEVREKSKLRDPLIHIKKRKLGW 125
Query: 537 YGHVMRRXENEVVKRVLT-MNVERFRXRGRPXKKWMDCVKDDMGRRGVSEEM-------V 382
GHV RR + + + R GRP +W D ++ ++ R ++
Sbjct: 126 AGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWSTQA 185
Query: 381 YDRRVWK 361
DR+ WK
Sbjct: 186 KDRKAWK 192
>Z75955-7|CAB00121.1| 550|Caenorhabditis elegans Hypothetical
protein R07B7.12 protein.
Length = 550
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 252 MLFENFKH*YXVSTSQHHHHYPALLPVTXGRRNMFSPSI 368
+L NF H Y S H + YP+ + G+R++F I
Sbjct: 313 ILVPNFSHNYHQEFSSHFNAYPSYHSIFYGKRDVFVEKI 351
>Z81556-6|CAB04523.2| 421|Caenorhabditis elegans Hypothetical
protein F58G1.6 protein.
Length = 421
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +3
Query: 522 SSHVHTIPNVHSSASLSXVPLSDFL*RIHSVFYPFSLLHTSIATFASLLHAIAFHPP 692
S+ + +P S ++ P S F + VF P +L T FA H H P
Sbjct: 337 STTYYCVPPSEMSFTVDPPPYSTFGAKTDPVFIPIHMLKTPYRPFAPAYHMFRNHGP 393
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,292,661
Number of Sequences: 27780
Number of extensions: 294875
Number of successful extensions: 804
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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