Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_N24
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    29   0.82 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   4.4  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    25   7.6  

>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
 Frame = -2

Query: 579 RESLRDKFKEIKI-----LTLASQYIFENLLYVRKNIVEFPRVCDLHNVNTRNKHRLALP 415
           RE + DKFK+IKI         S  I+  +L VR  I+E    CDL   +T +  R  L 
Sbjct: 169 RELIGDKFKDIKIGFFLHTPFPSSEIY-RVLPVRNEILEGVLNCDLVGFHTYDYARHFLS 227

Query: 414 A-ARIKKISNSXQG 376
           A +RI  +S    G
Sbjct: 228 ACSRILNLSTLPNG 241


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 362 LFNKIPQNVQLLPVHRFKKTVKERLCNKAY 273
           +FN +P +     +H  K T+  RLC K++
Sbjct: 520 VFNDVPYSEIDSQLHTIKSTIAARLCGKSH 549


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 605 FVLFIICTR-GNP*GTSLRKSKF*L*RPNTFLKIY 504
           + ++++CT  GNP  +SL K KF    PN    ++
Sbjct: 261 YTVYMVCTDFGNPNTSSLEKPKFDYLPPNILQSVH 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,793
Number of Sequences: 5004
Number of extensions: 44623
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)