Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_N24
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92972-2|CAB07487.1|  336|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AL021566-4|CAA16505.1|  336|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF024491-4|AAZ82855.1|  365|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF024491-3|AAB70311.2|  420|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF024502-1|AAK77624.1|  416|Caenorhabditis elegans Hypothetical ...    29   4.0  

>Z92972-2|CAB07487.1|  336|Caenorhabditis elegans Hypothetical
           protein T19C9.2 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 365 VHPAPXKELLIFLIRAAGNASLCLFLVFTLCKSQTLGN 478
           ++P P +E  IF +      +  +FLV+ L  S T GN
Sbjct: 185 IYPCPTREFFIFPVCVFEGTTSHIFLVYALVMSHTSGN 222


>AL021566-4|CAA16505.1|  336|Caenorhabditis elegans Hypothetical
           protein F08E10.6 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 365 VHPAPXKELLIFLIRAAGNASLCLFLVFTLCKSQTLGN 478
           ++P P +E  IF +      +  +FLV+ L  S T GN
Sbjct: 185 IYPCPTREFFIFPVCVFEGTTSHIFLVYALVMSHTSGN 222


>AF024491-4|AAZ82855.1|  365|Caenorhabditis elegans Hypothetical
           protein C24A1.2b protein.
          Length = 365

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 343 CGILLKSCTPS-PLXRVAYFLNSSRR*RKPMFVP 441
           CG LL +CTPS P     Y L++SRR  +P   P
Sbjct: 190 CGDLLTTCTPSNPSLLHPYLLDTSRRFSEPNPAP 223


>AF024491-3|AAB70311.2|  420|Caenorhabditis elegans Hypothetical
           protein C24A1.2a protein.
          Length = 420

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 343 CGILLKSCTPS-PLXRVAYFLNSSRR*RKPMFVP 441
           CG LL +CTPS P     Y L++SRR  +P   P
Sbjct: 245 CGDLLTTCTPSNPSLLHPYLLDTSRRFSEPNPAP 278


>Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical
           protein C44H9.6 protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/81 (23%), Positives = 32/81 (39%)
 Frame = -2

Query: 540 LTLASQYIFENLLYVRKNIVEFPRVCDLHNVNTRNKHRLALPAARIKKISNSXQGAGCTT 361
           L   ++ IF + +  +  +  FP       V   N HR+     + +K+     G   T 
Sbjct: 260 LPFVNKGIFGDEILSKITLKNFPEYNSFSFVKRINSHRIGSDTIQAEKLYWISDGDDATK 319

Query: 360 FQQDPTKRSTTTCS*I*ENCQ 298
           F+    KR+T+ C      CQ
Sbjct: 320 FKCFTVKRATSVCEHSLNYCQ 340


>AF024502-1|AAK77624.1|  416|Caenorhabditis elegans Hypothetical
           protein M151.7 protein.
          Length = 416

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 410 AAGNASLCLFLVFTLCKSQTLGNSTMFLRTYNKFSKMYWDAKVRILISLNLSLKD 574
           AA N+++ L L F   + +   N  + +   N   +  WDA + I   L + LKD
Sbjct: 203 AAENSAMKLELAFLKSELEQKDNKILVVVAENVILREEWDANIAIKQDLRVKLKD 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,240,304
Number of Sequences: 27780
Number of extensions: 253550
Number of successful extensions: 548
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)