Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_N22
(452 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 31 0.083
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ... 29 0.33
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar... 27 1.3
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 4.1
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 7.2
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 25 7.2
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 7.2
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 24 9.5
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 24 9.5
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 24 9.5
>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 31.1 bits (67), Expect = 0.083
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 196 TSLTRFLSGMALYSAFSCHRSLLLKLVPTIRSLHCITQTKDKNMKIKTG 342
T+ T+F S Y A + H SLL KL+ L+ + K K ++I G
Sbjct: 58 TNFTKF-SKFVYYLAITLHTSLLTKLIYCHADLYALQSIKYKRLRINNG 105
>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 116
Score = 29.1 bits (62), Expect = 0.33
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -1
Query: 194 FFSDPGQQLIMGIIARDLDHSDAEASITAGGIGFSYANIKLKSPRGSGLN 45
F+S PG++ I I+ L S +GG G Y + +KS G N
Sbjct: 27 FYSTPGERRIKDILTEKLSPSSLRVIDVSGGCGSMY-QVAIKSKAFQGKN 75
>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 27.1 bits (57), Expect = 1.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 51 SRASWAFQLYVGIRKTDASCSNTCFSIRV 137
+R SWA+ G K +CS TC V
Sbjct: 223 ARVSWAWSTVCGCYKNTYTCSQTCLEDEV 251
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.4 bits (53), Expect = 4.1
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = -1
Query: 293 KDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEV 195
K+LIV TS ++ L +E+ +NAI KR++E+
Sbjct: 711 KELIVQTSSFQKELVEERERHNAI--SKRLQEI 741
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 7.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 178 PGSEKNTSLTRFLSGMALYSAFSCHRSL 261
PG T++ S +SA SCHR+L
Sbjct: 453 PGKTVATTVCHSSSSSGDFSALSCHRNL 480
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 24.6 bits (51), Expect = 7.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 168 QLLSRIRKKYFFDSFLEWDGVIFGF 242
Q S I +FD EWD V+ GF
Sbjct: 499 QKTSSILVDLYFDFKAEWDNVMLGF 523
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 24.6 bits (51), Expect = 7.2
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = -1
Query: 248 QEKAEYNAIPLKKRVKEVFFSDPGQQLIMGIIARDLDHSDAEASITAGGIGFSYANIKLK 69
+EKA+ I K+ +E F+ + + + I R + H D ASI ++ ++I+ K
Sbjct: 753 EEKAKEKGINAKQASQE-FYENTCMRAVNQSIGRAIRHRDDYASIILLDSRYNRSSIQRK 811
Query: 68 SP 63
P
Sbjct: 812 LP 813
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 24.2 bits (50), Expect = 9.5
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -3
Query: 354 NEVRSRFDFHIFIFSLCY 301
N +R+ F+ F+FS+C+
Sbjct: 1495 NYASNRYSFNFFLFSVCF 1512
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 24.2 bits (50), Expect = 9.5
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +1
Query: 142 RSRAIIPIISCCPGSEKNTSLTRFLSGM-----ALYSAFSCHRSLLLK---LVPTIRSLH 297
R A+ P+ +C + N T G A+++A S +SL+L+ L I+ H
Sbjct: 47 RKHAVYPLAACNRLTNYNVWATVHGGGPTGQSGAVHAAIS--KSLILQEPSLKQVIKDTH 104
Query: 298 CITQTKDKNMKIKTG 342
C+ K K + KTG
Sbjct: 105 CVLNDKRKVERKKTG 119
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 24.2 bits (50), Expect = 9.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 69 FQLYVGIRKTDASCSNTCFSIRVV 140
F++ V + K +S SNTCFS+R V
Sbjct: 689 FEIPVTVMKP-SSISNTCFSLRDV 711
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,808,048
Number of Sequences: 5004
Number of extensions: 35301
Number of successful extensions: 82
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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