Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_N21
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    28   1.7  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    27   2.3  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.0  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    26   5.3  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   9.3  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    25   9.3  

>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +1

Query: 82  NVNNTFANF*ESKGKIINV*KLRILSEVPVKNINYWNSFKLNRLMKI 222
           + N  +AN+ E+K   I++ KL    ++P+   ++ + FK+N L+ I
Sbjct: 420 HTNERYANYCEAKTATISLSKLLRREKIPLLVSSFESLFKMNALLFI 466


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 367 DIFFYDCASTCPLPIPGFINQVN 299
           DIFF +C     LPIP  I QVN
Sbjct: 641 DIFFNNCFKNGMLPIPTPIEQVN 663


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 284 SRYVWVHLIYETRYWQWASARTIIEKYIS 370
           + Y+W  LI E+ ++ + S ++ I KY++
Sbjct: 114 AEYIWKSLIPESIFYHFVSLQSFIRKYLT 142


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 230 GFLIFISLFNLNEFQ*FIFFTGTSLNILSF 141
           GF  F+SLF+L EF     F G+ L+  SF
Sbjct: 40  GFFAFLSLFHLLEFYITARFQGSQLSWDSF 69


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 121 LYFLKSLRMYYLHCLINPTF 62
           L+FL SL+ Y   C+I P++
Sbjct: 455 LWFLSSLQYYAYECVIKPSY 474


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 727 HNCTYSNLTHFLISSG 774
           HN TY+NL ++L+ SG
Sbjct: 229 HNQTYTNLINYLLGSG 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,001
Number of Sequences: 5004
Number of extensions: 59953
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)