Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_N16
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1315 + 29270679-29270908,29270992-29271394,29271633-292717...    29   3.1  
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449...    28   9.4  

>06_03_1315 +
           29270679-29270908,29270992-29271394,29271633-29271796,
           29271943-29272013,29272360-29272559
          Length = 355

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +3

Query: 453 AIVAQKCSRYEKKHLISRFIAHYSISNAKPQRHSFILQTSENTHEIRNSVEKC 611
           A+V     RY+   L+ R +AHYS        H    +  E T E+R SV  C
Sbjct: 88  AVVINTWKRYD---LLRRSVAHYSGCGGVDAVHVVWSEPEEPTEELRGSVLNC 137


>12_02_0858 +
           23740589-23743233,23743362-23743503,23744778-23744990,
           23745083-23745190,23745378-23745587,23745881-23746055,
           23746197-23746264
          Length = 1186

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 395 TSNSKSLPIINKLLNAHYLGNSGPEM 472
           +SNS S  +++    A Y+GNSG EM
Sbjct: 157 SSNSSSQHVVSSSGEAKYIGNSGQEM 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,391,949
Number of Sequences: 37544
Number of extensions: 277602
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)