Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_N16
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-8|CAB55123.1|  205|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain, ...    28   8.4  
AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain, ...    28   8.4  

>AL117204-8|CAB55123.1|  205|Caenorhabditis elegans Hypothetical
           protein Y116A8C.17 protein.
          Length = 205

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 528 SNAKPQRHSFILQTSENTHEIRNSVEKCRP 617
           S     +HS ILQ +E+ H++ +++  C P
Sbjct: 43  STGSSDQHSVILQENESAHKLSSAIANCDP 72


>AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 8, isoform a protein.
          Length = 1219

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 163  LXKQLKSGTXTTCXRKRGAGEEKERXXSDG-KQAER 59
            L KQ KS       RKR   EEKER   +  K+AER
Sbjct: 937  LKKQQKSDELAEIERKRRESEEKERLEIEAKKEAER 972


>AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 8, isoform b protein.
          Length = 1144

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 163  LXKQLKSGTXTTCXRKRGAGEEKERXXSDG-KQAER 59
            L KQ KS       RKR   EEKER   +  K+AER
Sbjct: 937  LKKQQKSDELAEIERKRRESEEKERLEIEAKKEAER 972


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,958,905
Number of Sequences: 27780
Number of extensions: 282865
Number of successful extensions: 531
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)