Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_N15
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ...    27   1.2  
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    25   4.8  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    24   8.4  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    24   8.4  

>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +3

Query: 9   KKHFTIQVQAFKRQAEKKISRELYFFVLE 95
           K HF   VQ  K +A  K SRE YF  LE
Sbjct: 188 KSHFRF-VQVMKPKASLKESREAYFVCLE 215


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 194 SMRSMQPENMQSTQSTPGVRCTQQRPERYMQQLQGTCSSPAEAWLTRKPGE 346
           SM + Q  NM  +++   V C     + ++  +    S+ AE W+  KPGE
Sbjct: 240 SMNTQQIYNM--SRAFNHVWCILNNKKVFLYDVHPLHSTSAEDWIHMKPGE 288


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 40  SSARQKKKSVANYTFLYWNQINKIYHINIFGFMNLDVFLFN 162
           S+A   +++    T  YW   N +  + I+   +L V +FN
Sbjct: 183 SAAGGTQQNFVRQTTKYWVHPNNVTELKIYILKHLPVLVFN 223


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 109 FYLFDSNTKKYNSRLIFFSAWRLK 38
           F+LFD      +  LIF S W++K
Sbjct: 752 FHLFDDKEHACSLTLIFKSIWKVK 775


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,335,681
Number of Sequences: 5004
Number of extensions: 20554
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)