Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_N12
(586 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 29 0.38
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 29 0.50
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 28 0.87
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo... 27 2.0
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 27 2.0
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 4.7
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 6.2
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 6.2
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 6.2
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 8.1
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 29.5 bits (63), Expect = 0.38
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = -1
Query: 364 AAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQ 185
A +VVQE NDL ++L + LN AY+ +KK++ + +L N + +
Sbjct: 677 AVNKVVQEDILFAIDNVYNDLAESLHEQLN-----AYIQRKKINKKNQL------NGNDE 725
Query: 184 TQQWLTLVENFSSALKE---IGDVENW 113
TQ + + F KE + DV +W
Sbjct: 726 TQNLVLALNKFGCFAKEMVCLRDVNDW 752
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 29.1 bits (62), Expect = 0.50
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = -1
Query: 337 KRKECITA-ANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLV 161
K++ I A AN + DH N A +NQ + KLL+ G+ +F + L
Sbjct: 831 KKQAIIDANANIYDKLTADHTNYETVSADINQNLKETLDKLLN-GSSDFKNNEIELLHDQ 889
Query: 160 ENFSSALKEIGDVENWARSIENDMKIITDTLERAYEKAQEKPSSSQ*SN 14
++A E + + N K I DTL ++A EK S+ + SN
Sbjct: 890 IRITNAKLEKRE------KLINASKYIEDTLRSEIQEAAEKVSNLEFSN 932
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 28.3 bits (60), Expect = 0.87
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -3
Query: 278 KCRCCSSLFKSEKVRCGSKTFTPRC--NKFFQTNTAMVDSCGKFQQCSQRNWGCRKLGTK 105
+C C ++ K + K F P C N +T T ++S G+FQ ++N+ + GTK
Sbjct: 255 RCHGCYTVVKDME-----KKFCPSCGGNTLIKT-TCSINSKGEFQVHLKKNFEWKTRGTK 308
Query: 104 Y 102
Y
Sbjct: 309 Y 309
>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
Srk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 580
Score = 27.1 bits (57), Expect = 2.0
Identities = 20/91 (21%), Positives = 42/91 (46%)
Frame = -1
Query: 295 ALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENFSSALKEIGDVEN 116
+L + N+ A + Q+K+ + +QG +NF + + ++E D ++
Sbjct: 468 SLREVFNISYAAHRMEQEKIRKRGQRGNQGIMNF----------MGDMDDLMEENDDYDD 517
Query: 115 WARSIENDMKIITDTLERAYEKAQEKPSSSQ 23
+S+E+ MK + + E A +P+ SQ
Sbjct: 518 GTKSVEHSMKRVNLSGENDPSLASRQPAQSQ 548
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 27.1 bits (57), Expect = 2.0
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Frame = -1
Query: 268 VAQAYLNQKKLDAE--AKLLH-QGAINFSKQTQQWLTLVENFSSAL---KEIGDVENWAR 107
+A +L+ K + E L + +G + TQ W L+ENF S L +E ++ W+
Sbjct: 468 IAIKFLDDAKCETEDSTNLTNREGEAEKTLNTQPWKNLIENFISELQAEEEENNITEWSD 527
Query: 106 --SIEND 92
S+ ND
Sbjct: 528 IISVRND 534
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = -3
Query: 299 TSIGRSFKCRCCSSLFKSEKVRCGSKTFTPRCNKFFQTNTAMVDSC 162
T + + RC LFK++ + K F C + N ++D C
Sbjct: 1201 TPVQQQLLRRCLEILFKTKDLSTVKKEFQNVCYQIMSGNVPVMDFC 1246
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -1
Query: 277 NVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENFSSALKEIGDVENWARSIE 98
N+ + + + DA++K L + + K Q + + N S +LKE+ +V+N +E
Sbjct: 168 NLSLKWIIYDPEDADADSKTLAKAWLQQIKMNQTSIDPMSNISKSLKEL-EVDNVESDLE 226
Query: 97 N 95
+
Sbjct: 227 D 227
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.4 bits (53), Expect = 6.2
Identities = 18/80 (22%), Positives = 40/80 (50%)
Frame = -1
Query: 280 LNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENFSSALKEIGDVENWARSI 101
L V + QKK AEA+ + + +++T WL + + +S+ K++ +N +++
Sbjct: 667 LKVNKPEMKEGQKK--AEARKKKESPLEATEETNPWLQVPDQRTSSAKKLD--KNSSKAD 722
Query: 100 ENDMKIITDTLERAYEKAQE 41
+ + K+ D + E +E
Sbjct: 723 KKNHKLKMDKVASLQELVEE 742
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -1
Query: 262 QAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENFSSALKEIGDVEN 116
+ Y Q DA +H G FSK+ WL + + ++++ D +N
Sbjct: 444 ELYGKQFYYDAVGIAVHNGGFYFSKKKMGWLKPNQPYLLSIQDPVDFQN 492
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -1
Query: 163 VENFSSALKEIGDVENWARSIENDMKIITDTLERAYEKAQEKPSSS 26
+E F +I ++ +R END + + ++ +EKA ++P+ S
Sbjct: 1021 LEKFDKISDQILEIAMQSRK-ENDGRTLKQVIQLTFEKATDEPNFS 1065
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,237
Number of Sequences: 5004
Number of extensions: 36715
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -