Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_N11
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   3.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   5.0  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   6.6  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    25   6.6  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 124  IHMFFYKNYIHNIFIVCIKCY 62
            + MFF++N    +F++ + CY
Sbjct: 1019 VFMFFFRNLFQIVFVLAVICY 1039


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +3

Query: 174 IVMYLYIIIMNHIITTHKYLNTRYFVYFFFTKANQQGAFLYNQLQKSFVHNFI 332
           ++ ++Y++I++  +     +NT+Y  Y   +   +QG F Y  L  ++ +N I
Sbjct: 13  LLFFVYLLIISTRLVAAD-MNTQYGCYLVDSSLTEQGTFTY--LDPAYCYNNI 62


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 118  MFFYKNYIHNIFIVCIKCY 62
            MFF++N I  +FI+ + CY
Sbjct: 1023 MFFFRNSIQVLFILGVICY 1041


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 253 IFFLQKRINKALFYIISFKNPLCIISLKISFTNF 354
           +F L  +I  ++  + +F+N L I+S ++SF +F
Sbjct: 88  VFQLLSKIRNSVPNVSAFRNNLSILSKELSFFSF 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,959,431
Number of Sequences: 5004
Number of extensions: 33782
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)