Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_N11
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical...    28   6.1  
Z77134-9|CAB00870.2|  241|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical
           protein Y102A5C.23 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 120 ICSFTRITYIIYLLFVLNVTKLFVKRIPTYNNIFLF 13
           +C  T++ ++  LLFVL V + F+  IP+   +F F
Sbjct: 96  LCIITQVFHV--LLFVLAVERFFIYFIPSSGKLFKF 129


>Z77134-9|CAB00870.2|  241|Caenorhabditis elegans Hypothetical
           protein R09H10.1 protein.
          Length = 241

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 241 DILYIFFLQKRINKALFYIISFKNPLC 321
           D  Y FF   R N    Y ++FK+P+C
Sbjct: 208 DKRYAFFRPVRGNHIRLYFVNFKDPIC 234


>AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical
           protein Y37E11AM.1 protein.
          Length = 1037

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 589 HFGANTVYFDSLGTKSDISGVN 524
           HF  N V FD LG   D  G+N
Sbjct: 15  HFDVNRVKFDDLGIPQDTGGLN 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,466,454
Number of Sequences: 27780
Number of extensions: 179872
Number of successful extensions: 421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)