Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_N11
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.1  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   3.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   4.1  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   4.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.5  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   5.5  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   9.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 506 IKCYHVMCFIFLF 468
           I  Y VMCF+F+F
Sbjct: 304 IDIYLVMCFVFVF 316


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 94  VCNSCKRTY-VYNAIRQNSNKVY 159
           +CN CKR Y   N++R N   +Y
Sbjct: 34  ICNICKRVYSSLNSLR-NHKSIY 55


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 166 NKNIPYLNFVG*RYIHMFFYKNYIHNI 86
           N N  Y N+    Y    +YKNYI NI
Sbjct: 99  NYNNKY-NYNNNNYNKKLYYKNYIINI 124


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 40  YSFNKQFRNI*YKQ*IYYVCNSCKRTY 120
           YS  + F++   +    YVC  C R Y
Sbjct: 19  YSLKRHFQDKHEQSDTLYVCEFCNRRY 45


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 5/14 (35%), Positives = 12/14 (85%)
 Frame = +2

Query: 560 IKINCISTKVFFYK 601
           ++  C+ST++F+Y+
Sbjct: 273 LRFGCLSTRLFYYQ 286


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 91  YVCNSCKRTYVYNAIRQNSNKVYFYF 168
           Y  + C++TY Y       N   F+F
Sbjct: 117 YTGDDCQKTYQYVQCHYKQNPEKFFF 142


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -1

Query: 166 NKNIPYLNFVG*R-YIHMFFYKNYIHNI 86
           + N  Y N+     Y    +YKNYI NI
Sbjct: 86  SNNYKYSNYNNYNNYNKKLYYKNYIINI 113


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 241 DILYIFFLQKRINKALFYIISFKNPLCII 327
           D   IF    +IN+ L +IIS + P+ ++
Sbjct: 359 DEAMIFPADVKINRGLXWIISDRMPVFLL 387


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/32 (21%), Positives = 15/32 (46%)
 Frame = +1

Query: 91  YVCNSCKRTYVYNAIRQNSNKVYFYFSKLSCT 186
           Y C+ C +++ YN + +     ++      CT
Sbjct: 232 YTCDICGKSFGYNHVLKLHQVAHYGEKVYKCT 263


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 315 RIFEADYIKKRLVDSLL 265
           +IFEA+   KRL D LL
Sbjct: 26  KIFEANPDTKRLYDDLL 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,507
Number of Sequences: 438
Number of extensions: 2459
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)