Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_M17
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132...    66   4e-11
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450...    36   0.033
03_05_1105 + 30438140-30438350,30438448-30438926                       33   0.17 
03_01_0560 + 4162206-4162607                                           30   1.6  
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527...    28   8.7  

>02_01_0195 +
           1327071-1327187,1328060-1328203,1328340-1328431,
           1329393-1329579,1329676-1329831,1329959-1330012
          Length = 249

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
 Frame = -3

Query: 488 LVFVCFSAAAMLAERGSWXXXXXXXXXXXTSMS-LMTLVNLFMQSHFLYQAHLYLGLMLM 312
           + F CF+ AA++A+R  +           + +  L    ++F  S   +   +Y GL++ 
Sbjct: 129 IAFGCFTCAAIVAKRREYLYLGGLLSSGLSILLWLQFAASIFGHSTGSFMFEVYFGLLIF 188

Query: 311 CGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVIIL 180
            G++++DTQ IIE+   G  D+++HAL LF DF+ +  R+++I+
Sbjct: 189 LGYMVYDTQEIIERAHHGDMDYIKHALTLFTDFVAVLVRILVIM 232



 Score = 37.1 bits (82), Expect = 0.014
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -2

Query: 606 RLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTXPGICMLLCCCYAC*TRQ 439
           R G LL   L  G S+GPL++     D SI++TA +GT        C       R+
Sbjct: 90  RFGILLAAALLEGASVGPLIKLAVDFDSSILVTAFVGTAIAFGCFTCAAIVAKRRE 145


>05_04_0254 -
           19444409-19444621,19444724-19444887,19444974-19445087,
           19446086-19446395
          Length = 266

 Score = 35.9 bits (79), Expect = 0.033
 Identities = 14/57 (24%), Positives = 35/57 (61%)
 Frame = -3

Query: 329 LGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVIILTQKEEQN 159
           LG ++  GF+++DT+ +I  +R    D++  ++EL++D + +F  ++ ++   +  N
Sbjct: 212 LGALVFSGFIIYDTENLI--KRHTYDDYIWASVELYLDILNLFLYILNMIRSMQSDN 266


>03_05_1105 + 30438140-30438350,30438448-30438926
          Length = 229

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = -3

Query: 329 LGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVII 183
           L  ++ CG++++DT  +I  +R    ++V  A+ L++D I +F  L+ +
Sbjct: 177 LAALVFCGYIVYDTDNLI--KRYSYDEYVWAAVALYLDVINLFLSLLTL 223


>03_01_0560 + 4162206-4162607
          Length = 133

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -2

Query: 705 FTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMG 556
           F  F  G   A+  A L L+L+A  D     +   G+L G  LT   S+G
Sbjct: 58  FLSFTIGTALALAAAYLALLLLAATDKMLGADAVTGFLWGADLTGAASLG 107


>04_03_0747 -
           19251617-19251781,19252377-19252502,19252606-19252716,
           19252931-19253679,19254034-19254167,19254595-19254740,
           19255166-19255336,19255977-19256828
          Length = 817

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = +1

Query: 406 SVINVPPRNSQ----LPRS--ASIAAAEKHTNTRXSAEQSSYYDRWVNYTDIFKQGTHAH 567
           S +N PPR  +    LP S  A++AA   + N    AEQ +   R VN     + G  +H
Sbjct: 380 SEVNKPPRGKRKQGGLPLSSRATLAAWPTNANATNDAEQGASVPRTVNTPHPTRLGNASH 439

Query: 568 A 570
           A
Sbjct: 440 A 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,203,766
Number of Sequences: 37544
Number of extensions: 362156
Number of successful extensions: 719
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)