Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_M17
(727 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical ... 40 0.002
Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical p... 38 0.007
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 29 4.5
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 29 4.5
Z92780-4|CAI46549.1| 642|Caenorhabditis elegans Hypothetical pr... 28 5.9
AL021466-4|CAI46582.1| 642|Caenorhabditis elegans Hypothetical ... 28 5.9
AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain (... 28 7.8
AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain (... 28 7.8
AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain (... 28 7.8
>AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical
protein Y42H9AR.2 protein.
Length = 133
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = -3
Query: 371 LFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRR--MGSKDFVQHALELFIDFIGMFR 198
+F+ FLY + LG +L ++ D QLI+ RR + ++++ A +F+D +GMF
Sbjct: 65 IFLNWQFLYIVYAVLGALLCMFYLAIDIQLIMGGRRVEISPEEYIFAATHVFVDILGMFL 124
Query: 197 RLV 189
++
Sbjct: 125 NIL 127
>Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical
protein F40F9.2 protein.
Length = 244
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = -3
Query: 398 SMSLMTLV-NLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRR--MGSKDFVQHALE 228
S + L+ L FLY + L +LM ++ D QL++ R+ + +D++ A+E
Sbjct: 165 SFGIFALIFTLAFNWQFLYSVYSGLAALLMMFYLAIDVQLLMGGRKYELSPEDYIFAAME 224
Query: 227 LFIDFIGMFRRLVII 183
+F+D + +F L+ I
Sbjct: 225 IFLDILNIFLMLLNI 239
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 473 SIQIPGXVPSRAVIMIDGSTTLTYSSRGPMLMPDVNPNPSR*PSRKL 613
S ++P +PSRA +M + LT+ PM P P R PS KL
Sbjct: 232 STRVPPPIPSRAPVMSPVQSPLTHPPVAPMPRCP-PPLPPRTPSMKL 277
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 473 SIQIPGXVPSRAVIMIDGSTTLTYSSRGPMLMPDVNPNPSR*PSRKL 613
S ++P +PSRA +M + LT+ PM P P R PS KL
Sbjct: 232 STRVPPPIPSRAPVMSPVQSPLTHPPVAPMPRCP-PPLPPRTPSMKL 277
>Z92780-4|CAI46549.1| 642|Caenorhabditis elegans Hypothetical
protein C45G3.5 protein.
Length = 642
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 436 QLP-RSASIAAAEKHTNTRXSAEQSSYYDRWVNYTDI 543
Q+P RS A +KH AE SS +WV Y D+
Sbjct: 524 QMPSRSLGDIAMKKHLMHALDAEISSIKQKWVGYVDL 560
>AL021466-4|CAI46582.1| 642|Caenorhabditis elegans Hypothetical
protein C45G3.5 protein.
Length = 642
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 436 QLP-RSASIAAAEKHTNTRXSAEQSSYYDRWVNYTDI 543
Q+P RS A +KH AE SS +WV Y D+
Sbjct: 524 QMPSRSLGDIAMKKHLMHALDAEISSIKQKWVGYVDL 560
>AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform c protein.
Length = 784
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 633 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 520
PD + ++R G +GFG + + ++++VS PS
Sbjct: 90 PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127
>AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform a protein.
Length = 814
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 633 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 520
PD + ++R G +GFG + + ++++VS PS
Sbjct: 90 PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127
>AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform b protein.
Length = 853
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 633 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 520
PD + ++R G +GFG + + ++++VS PS
Sbjct: 129 PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,685,404
Number of Sequences: 27780
Number of extensions: 316548
Number of successful extensions: 729
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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