Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_M15
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0098 - 12844631-12845074,12845329-12846570                      188   6e-48
05_03_0557 - 15441039-15442730                                         30   2.4  
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087...    28   7.4  
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875...    28   7.4  
02_02_0139 + 7122880-7122979,7123328-7123560,7123961-7124032,712...    28   7.4  
06_01_1086 + 8890806-8890865,8890970-8891055,8891366-8891440,889...    28   9.8  

>10_07_0098 - 12844631-12845074,12845329-12846570
          Length = 561

 Score =  188 bits (457), Expect = 6e-48
 Identities = 95/228 (41%), Positives = 138/228 (60%), Gaps = 19/228 (8%)
 Frame = -2

Query: 790 FVEALLYXRDSGVLMLGDMV--DEVGRDG-KLNPIGVWHAEWFFKQVEKHLKRKRTAIEY 620
           FVE ++Y  + GV+M G     +E  + G K+N +G W   WF++  +  LK K   +EY
Sbjct: 271 FVEGMVYTENEGVMMTGVYASKEEAKKKGNKINCVGWWFKPWFYQHAQTALK-KGEFVEY 329

Query: 619 IPLRDYYHRHTRSLFWELQDIISFGNNFIFRYLFGWLMPPEVSLLKLTQPEAVTKLYNKA 440
           IP R+YYHRHTR L+WE + I+ FG+ F FR+L GWLMPP+VSLLK TQ E++   Y+  
Sbjct: 330 IPTREYYHRHTRCLYWEGKLILPFGDQFWFRFLLGWLMPPKVSLLKATQGESIRNYYHDN 389

Query: 439 HVIQDMLIPIELLEKAIAFFHDEFEVYPIWLCPFKIFNNPGQLKI--KPGEE-------- 290
           HVIQDML+P+  +  A+ F H E EVYP+WLCP +++  P +  +  +PG E        
Sbjct: 390 HVIQDMLVPLYKVGDALEFVHKEMEVYPLWLCPHRLYKLPVKTMVYPEPGFEHHHRQGDT 449

Query: 289 --SQMFVDIGVYGVP----KAKGFETIASTRHVESFVIQNQGFQMLYA 164
             +QMF D+GVY  P    + + F    +   +E ++I+N  +Q  YA
Sbjct: 450 SYAQMFTDVGVYYAPGAVLRGEEFNGALAVHRLEQWLIENHSYQPQYA 497


>05_03_0557 - 15441039-15442730
          Length = 563

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 566 ARHNFVWEQLYFPLPVRLVDASGGL 492
           ARH + WE L+  L V ++D +GGL
Sbjct: 353 ARHGYFWEALFTFLYVDILDTTGGL 377


>04_04_1229 -
           31906854-31907300,31907986-31908181,31908631-31908756,
           31909962-31910329,31910680-31910835,31910968-31911168,
           31911230-31911375,31911439-31911865,31912527-31912627,
           31913197-31913254
          Length = 741

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 755 RAHVRRHGG*SRQRWKAQSNRGVARGMVLQTSGE 654
           RA  RR GG  R+ W A ++ G + G+ + TSG+
Sbjct: 677 RASSRRSGGYRRKGWAAPASGGGSVGVGILTSGK 710


>04_04_1189 + 31586991-31587291,31587358-31587397,31587449-31587534,
            31587535-31588097,31588250-31589913,31589956-31590066,
            31590152-31591181,31591234-31591406,31591535-31591814,
            31592275-31592331
          Length = 1434

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -2

Query: 580  LFWELQDIISFGNNFIFRYLFGWL----MPPEVSLLKLTQPEAVTKLYNKAHVIQDMLIP 413
            +FW L +++S   N        WL     P    L ++  P ++T+LYNK   I   ++P
Sbjct: 1369 IFWHLPNLLSLPANLASLTSLKWLHIGDCPRITRLPEMGLPLSLTQLYNKHTWILQTMVP 1428


>02_02_0139 +
           7122880-7122979,7123328-7123560,7123961-7124032,
           7124257-7124334,7124529-7124579,7124654-7124703,
           7124807-7124915,7125023-7125223
          Length = 297

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = -1

Query: 488 IEVDAARSRHQVVQQGSRDTRHANTN*ALGESDCVLSRRIRGIPYMVVSFQNIQQPWTAE 309
           ++V A R  HQV+   S D     T   L     +    I    +M V  + + QP+  E
Sbjct: 189 LDVVAFRHAHQVLFDKS-DILFICTLKPLSSDISIDESEIEAARWMPVE-EFVSQPFHQE 246

Query: 308 DKTWRGITDVC 276
           D+  R ITD+C
Sbjct: 247 DEMSRAITDIC 257


>06_01_1086 +
           8890806-8890865,8890970-8891055,8891366-8891440,
           8892780-8892921,8893304-8893490,8893944-8894425,
           8894595-8894975,8895056-8895100,8896486-8896639,
           8897750-8897895,8898016-8898099
          Length = 613

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 753 CSC*ETWWM-KSAEMESSIQ*GCGTRNGSSNKWRSI*KESAPR 628
           CSC  T W+  S  + S I+   G+ + S +KW S   ++ PR
Sbjct: 70  CSCLRTSWIIDSHRIASKIKNASGSVDASKHKWVSNPTKACPR 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,505,772
Number of Sequences: 37544
Number of extensions: 458104
Number of successful extensions: 1081
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)