Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_M15
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 2/119 (1%)
 Frame = -3

Query: 375 TNSRYTLYGCVLSKYSTTLDS*R*N--LARNHRCLSISECMAFQKPKDLKQLHXXXXXXX 202
           TNS    +    S YS T D  R +  L  +H+ L+  +     +P D  ++H       
Sbjct: 219 TNSNSIKHESDNSDYSHTTDENRHSSTLDIDHKMLTPIK----SEPIDAYEMHQISKKKL 274

Query: 201 XXXXTKASKCYMPIPTQXREEFRQMFDHKLYDRVRASLPNXQGSLTPRXMRKATRNVRK 25
                K SKC M    + ++E   M     YD ++  L        P    +   N +K
Sbjct: 275 SPATPKGSKCSMITTPEIKKEVEDM----EYDDIKTELSTGMNDDIPPETEEEEENDKK 329


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 600 TIVTLEVCSGNCK 562
           T V  +VCSGNCK
Sbjct: 235 TRVIPQVCSGNCK 247


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 600 TIVTLEVCSGNCK 562
           T V  +VCSGNCK
Sbjct: 235 TRVIPQVCSGNCK 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,214
Number of Sequences: 438
Number of extensions: 5206
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)