Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_M08
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 29 0.45
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 3.2
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 3.2
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 26 4.2
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 25 5.6
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.6
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 25 7.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 7.3
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 9.7
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 9.7
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 25 9.7
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 29.1 bits (62), Expect = 0.45
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 385 VVAVTRVDLLRSC-QSYNEDGEQNEQFREHFEQFSK 489
++ V R +L+R C +NE E E F+ ++ FSK
Sbjct: 383 IMKVIRKNLVRRCLDMFNEIAEDKENFKTFYDAFSK 418
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 401 LVTATTITDIRIQATSVIPDTVPWPMDRTVAMLPL 297
+V TTIT + +++ +T+ PM+ T +LP+
Sbjct: 120 MVETTTITPMVEAMITLMEETMTTPMEETTTILPM 154
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = -3
Query: 251 KHLCY*FNKNILKNIMILLFISFEILINNFRGLLSIYKTPLFLSVFFFSCQLPFCECLQD 72
+++C KN++ +++ + IS EI L + +K+ L VFF P E
Sbjct: 448 QYICLALAKNVVSHVLPVFEISCEIFWLILSELKNFFKSE--LEVFFTEIFFPILE---- 501
Query: 71 KIXRGTNHESVFLFDIF 21
+ +N + + L +IF
Sbjct: 502 -MRTSSNQQKIVLLNIF 517
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 44 IHDSYLLXSYLANIHKMVVDMRKKKHSKTKAFCKSK--VIHEN 166
+ +S L+ + +I ++D RK+ + + K F ++ ++HEN
Sbjct: 115 VAESVLVLTPFESIKTAIIDDRKRPNPRLKGFLQASRIIVHEN 157
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 209 IMILLFISFEILINNFRGLLSIYK 138
++ LL + +I NFRG LSIY+
Sbjct: 328 VVALLLMQHKISNGNFRGALSIYQ 351
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 219 SKKHYDSTVYII*NID**FSWITFDLQNAFVFECFFFLMSTTI 91
SKK ++ +Y I F +TF L N F+ C+ FL T+
Sbjct: 9 SKKKRNTQIYRI------FFTLTFSLSNLFLAICYLFLNVRTV 45
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 454 EQFREHFEQFSKLTDDLGHRR 516
E FREHF+ S L D +G R
Sbjct: 375 EDFREHFKTVSALMDCVGCER 395
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -1
Query: 490 TLKTAQNVRETVHSVRR--PRCSSGKT 416
T+ Q +R+ +H++R+ PR SS KT
Sbjct: 1161 TITAEQEMRDLLHNIRQPLPRSSSSKT 1187
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = -1
Query: 538 QIFFKSSRAGVLDHQSTLKTAQNVRETVHSVRRPRCSSGKTSTDLLWLRLQ 386
Q FFK + D STL+ N + S + S K L WL L+
Sbjct: 60 QDFFKMLSSRDRDAHSTLRKRSNSLSSFLSTKSTSASENKFHGGLNWLSLK 110
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 86 HKMVVDMRKKKHSKTKAFCKSKVIHEN 166
HK + D+R K++ +T+ K+ V H +
Sbjct: 242 HKSLTDIRDKENGETEVSAKNHVPHRS 268
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 503 RSSVNFENCSKCSRNCSFCSPSSL*LWQD 417
R + ++ N KC +N SP++ LW D
Sbjct: 87 RETKDYNNSLKCYQNALAISPNNESLWYD 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,890
Number of Sequences: 5004
Number of extensions: 35380
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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