Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_M06
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...    28   0.69 
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...    28   0.69 
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    25   4.8  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   4.8  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    25   6.4  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +1

Query: 385 HIFSSFNDTIIHL 423
           HIF+SFNDT +H+
Sbjct: 20  HIFASFNDTFVHI 32


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +1

Query: 385 HIFSSFNDTIIHL 423
           HIF+SFNDT +H+
Sbjct: 20  HIFASFNDTFVHI 32


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = +3

Query: 270 LNLPVFYIIQNYVYEYSEILYINKQY 347
           L LPV+ ++ + + +YSE+ Y+++ +
Sbjct: 687 LELPVYAMLDHRLAQYSELPYLDRNH 712


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 191 ETCTRLSR*TVINMNLKLFFYDTN*HFEFTSLLYNTKL 304
           + C++L   T+      LFFYD + H    S+ +   L
Sbjct: 493 QDCSQLHALTLTYAKKMLFFYDDDLHISLNSIYHELSL 530


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -2

Query: 371 DLNKIGLKILFINI*YFTVLIDV-VLYYI 288
           DL K+G+ ILF+   +F +L+ + V++Y+
Sbjct: 419 DLQKLGISILFV---FFIILVCLAVIFYV 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,046
Number of Sequences: 5004
Number of extensions: 26107
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)