Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_M06
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425...    28   3.6  
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315...    28   3.6  
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335...    28   3.6  
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...    27   4.7  

>04_03_0871 -
           20441689-20441756,20442220-20442349,20442422-20442507,
           20444271-20444316,20444425-20444547,20445302-20445370
          Length = 173

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +1

Query: 385 HIFSSFNDTIIHL 423
           HIF+SFNDT IH+
Sbjct: 54  HIFASFNDTFIHV 66


>02_04_0100 -
           19730137-19730237,19731215-19731344,19731419-19731504,
           19732410-19732455,19732558-19732680,19732779-19732781
          Length = 162

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +1

Query: 385 HIFSSFNDTIIHL 423
           HIF+SFNDT IH+
Sbjct: 32  HIFASFNDTFIHV 44


>02_01_0469 -
           3359156-3359500,3359595-3359680,3359766-3359811,
           3359897-3360016,3360622-3360624
          Length = 199

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +1

Query: 385 HIFSSFNDTIIHL 423
           HIF+SFNDT IH+
Sbjct: 31  HIFASFNDTFIHV 43


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 186 NLLRDKLSCSCYLCRISNTYYH 121
           ++LRD    SC  C++S+ +YH
Sbjct: 269 HVLRDTREVSCDTCKVSDDFYH 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,868,939
Number of Sequences: 37544
Number of extensions: 117380
Number of successful extensions: 201
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)