Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_M06
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-6|AAG00007.2|  575|Caenorhabditis elegans Intermediate fi...    29   1.0  
U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...    28   3.2  
AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical ...    27   5.5  
U58746-3|AAB00623.1|  188|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>U41538-6|AAG00007.2|  575|Caenorhabditis elegans Intermediate
           filament, d protein1, isoform a protein.
          Length = 575

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 105 STXYRYGNKYYLSCKDNMNKTIYHE 179
           ++ + YG+ Y L+ +D  NKT++H+
Sbjct: 424 TSSHHYGSSYSLNVRDTHNKTVHHD 448


>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +1

Query: 385 HIFSSFNDTIIHL 423
           HIF+SFNDT +H+
Sbjct: 33  HIFASFNDTFVHI 45


>AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical
           protein Y39C12A.5 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 218 FIYLVLYMFLRTYFVINCLVHVIFA 144
           F Y   Y+ + T+F+I C++ VIF+
Sbjct: 208 FKYYTRYVSILTFFIIVCILSVIFS 232


>U58746-3|AAB00623.1|  188|Caenorhabditis elegans Hypothetical
           protein R05G6.5 protein.
          Length = 188

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 264 NILNLPVFYIIQNYVYEYSEIL-YINKQYF 350
           N+++  +  I+ NY YEY  +L +I K+ F
Sbjct: 15  NLVDRIIVIILPNYFYEYESVLKHITKENF 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,028,496
Number of Sequences: 27780
Number of extensions: 138530
Number of successful extensions: 314
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)