Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_M02
(763 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026214-5|AAB71310.1| 525|Caenorhabditis elegans Hypothetical ... 235 2e-62
AL034489-1|CAA22461.1| 538|Caenorhabditis elegans Hypothetical ... 128 3e-30
Z92786-10|CAB07212.3| 984|Caenorhabditis elegans Hypothetical p... 29 4.8
U80837-1|AAB37900.1| 103|Caenorhabditis elegans Hypothetical pr... 29 4.8
AL021473-3|CAA16306.3| 984|Caenorhabditis elegans Hypothetical ... 29 4.8
Z81479-6|CAB03938.1| 411|Caenorhabditis elegans Hypothetical pr... 28 8.3
AC006680-10|AAK72297.2| 335|Caenorhabditis elegans Seven tm rec... 28 8.3
>AF026214-5|AAB71310.1| 525|Caenorhabditis elegans Hypothetical
protein F52H2.6 protein.
Length = 525
Score = 235 bits (575), Expect = 2e-62
Identities = 100/202 (49%), Positives = 140/202 (69%), Gaps = 1/202 (0%)
Frame = -1
Query: 760 GVXMLGDMVDEVG-RDGKLNPIGVWHAEWFFKQVEKHLKRKRTAIEYIPLRDYYHRHTRS 584
G MLG+ D D +NPIG W+ +WF+ VE + +K +IEYIPLRDYYHRH++S
Sbjct: 284 GCIMLGEFSDGPDTHDEVVNPIGRWYKKWFYTHVEDLINKKHESIEYIPLRDYYHRHSKS 343
Query: 583 LFWELQDIISFGNNFIFRYLFGWLMPPEVSLLKLTQPEAVTKLYNKAHVIQDMLIPIELL 404
+FWEL+DI+ FGNN +FRYL W+ PP+++ LK T P + KLY+++HV+QDML+P++ L
Sbjct: 344 IFWELRDIVPFGNNVLFRYLMAWMCPPKIAFLKATTPNVLRKLYDRSHVLQDMLVPLDKL 403
Query: 403 EKAIAFFHDEFEVYPIWLCPFKIFNNPGQLKIKPGEESQMFVDIGVYGVPKAKGFETIAS 224
E+ I FH E E+YP+WLCPF + + PG +K++ +M+VD+G YGV G+ +
Sbjct: 404 EECIDLFHKEVEIYPMWLCPFYLKSQPGLMKLR-NATHKMYVDVGAYGVTSKDGYHHERT 462
Query: 223 TRHVESFVIQNQGFQMLYADTY 158
TR +ESFV GFQM YAD Y
Sbjct: 463 TRRLESFVRSVNGFQMTYADIY 484
>AL034489-1|CAA22461.1| 538|Caenorhabditis elegans Hypothetical
protein Y7A5A.1 protein.
Length = 538
Score = 128 bits (310), Expect = 3e-30
Identities = 72/219 (32%), Positives = 119/219 (54%), Gaps = 16/219 (7%)
Frame = -1
Query: 757 VXMLGDMVDEVGR-DGKLNPIGVWHAEWFFKQVEKHLKRKRTAIEYIPLRDYYHRHTRSL 581
V M+G+ D + + K+N + ++ WF+K VE LK+ EYIPL Y RH R++
Sbjct: 271 VIMVGNFADVDSKSNAKVNDVCWFYKPWFYKHVETFLKKGGE--EYIPLESYLLRHNRAI 328
Query: 580 FWELQDIISFGNNFIFRYLFGWLMPPEVSLLKLTQPEAVTKLYNKAHVIQDMLIPIELLE 401
FW ++ +I FGN+ +FR GWL PP+ + LK T +AV ++ V QD+++P++ L+
Sbjct: 329 FWVVESMIPFGNHPVFRAFLGWLCPPKPAFLKFTTTQAVREMTFAKQVFQDIVMPLDTLK 388
Query: 400 KAIAFFHDEFEVYPIWLCPFKIFNN-----PGQL------KIKPGEESQMFVDIGVYGVP 254
+ + F+ YP+ + P +I+++ GQL ++ PG MF D+GVYG P
Sbjct: 389 EQVDTAVKLFDTYPLLVYPCRIYDHKGGAPQGQLRAPPKSRLVPGTNYSMFNDLGVYGTP 448
Query: 253 ----KAKGFETIASTRHVESFVIQNQGFQMLYADTYTXE 149
+ + + + R +E F G+ LYAD + E
Sbjct: 449 GQVERREPYNPTHAMRAMEKFTRDVGGYSFLYADIFMSE 487
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 147 EEFRQMFDHKLYDRVRASLPNXQGSLPR 64
EEF +MFD LY++VR + G+ PR
Sbjct: 488 EEFNEMFDMTLYNQVRLRY-HCDGAFPR 514
>Z92786-10|CAB07212.3| 984|Caenorhabditis elegans Hypothetical
protein Y20C6A.1 protein.
Length = 984
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 745 GDMVDEVGRDGKLNPIGVWHAEWFFKQVEKHLKRKRTAIEYI 620
GD+V +G GV H +WFFK K +++ I+Y+
Sbjct: 914 GDLVPTLGASSSDTKEGVIHKKWFFKM--KIDRQRAVCIDYL 953
>U80837-1|AAB37900.1| 103|Caenorhabditis elegans Hypothetical
protein F07E5.4 protein.
Length = 103
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 757 VXMLG-DMVDEVGRDGKLNPIGVWHAEWFFKQVEKHLKRKRT 635
+ M G D V E G GK P G + E K++ HLK+KR+
Sbjct: 39 IVMAGKDQVQEFG--GKKPPSGKYTIELMGKKIPNHLKKKRS 78
>AL021473-3|CAA16306.3| 984|Caenorhabditis elegans Hypothetical
protein Y20C6A.1 protein.
Length = 984
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 745 GDMVDEVGRDGKLNPIGVWHAEWFFKQVEKHLKRKRTAIEYI 620
GD+V +G GV H +WFFK K +++ I+Y+
Sbjct: 914 GDLVPTLGASSSDTKEGVIHKKWFFKM--KIDRQRAVCIDYL 953
>Z81479-6|CAB03938.1| 411|Caenorhabditis elegans Hypothetical
protein C34F6.7 protein.
Length = 411
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = -1
Query: 523 FGWLMPPEVSL--LKLTQPEAVTKLYNKAHVIQDMLIPIELLEKAIAFFHDEFEVYPIWL 350
F + PPE L L LT + T LYN D +E K +AFFH YP +
Sbjct: 46 FALVFPPEELLDGLGLTLFDLFTILYNSRQ--HDF---VEYAAKRVAFFHAFVAFYPCVI 100
Query: 349 CPFKIFNN 326
+ + N
Sbjct: 101 AAYFVHGN 108
>AC006680-10|AAK72297.2| 335|Caenorhabditis elegans Seven tm
receptor protein 41 protein.
Length = 335
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -1
Query: 553 FGNNFIFRYLFGWLMPPEVSLLKLTQPEAVTKLYNKAHVIQDMLIPIELLEKAI 392
FG F Y F + + +S+L LT P+ T Y +A +I+ + IE + + +
Sbjct: 133 FGVIFWILYPFLYGVVNSLSILFLTSPDGFTDDYLRAEIIEKYELDIENIARLV 186
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,905,254
Number of Sequences: 27780
Number of extensions: 387291
Number of successful extensions: 1053
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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