Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_L24
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   3.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   4.7  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   4.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   4.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   4.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.1  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 568 LACIQR*PGKCSRD 609
           LACI   PG+C R+
Sbjct: 172 LACISSRPGQCGRE 185


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 613 VCLGCICQAISG 578
           VCLG +CQ  +G
Sbjct: 8   VCLGIVCQGTTG 19


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 90  KAFSSKDSSCIRNTN-WKM*FNRKYKY 13
           K  SS  +  I N N +K  +N KY Y
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNKYNY 106


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 613 VCLGCICQAISG 578
           VCLG +CQ  +G
Sbjct: 8   VCLGIVCQGTTG 19


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 613 VCLGCICQAISG 578
           VCLG +CQ  +G
Sbjct: 8   VCLGIVCQGTTG 19


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 27  Y*ITFSNLYFEYTKNPLMKMLLYEHYLFQF*MNCRDS 137
           Y +T    YF  T NP++  ++   Y   F   CR S
Sbjct: 298 YPLTGCLYYFSTTINPILYNVMSAKYRNAFKETCRCS 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,357
Number of Sequences: 438
Number of extensions: 4489
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)