Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_L23
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    28   1.8  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    27   2.3  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    27   3.1  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    27   3.1  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    27   4.1  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   5.4  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   5.4  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    26   7.1  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   9.4  
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce...    25   9.4  

>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 751 LLELWVMKILQVTLRETKPLFTNWIQLKMGN*RR*SKLCHYQTA 620
           LL LW + +    L +T+PL T  +  K G  R  + +C Y  A
Sbjct: 103 LLFLWAIVMNMDALFQTQPLLTLVVHCKAGKGRTGTVICSYLVA 146


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 716 NFERNKASLYKLDSAKDGKLEKMIETVSLSNGL 618
           N E  K  + K     +G L+  +ET++L NGL
Sbjct: 74  NNEYRKTDVVKNSDTDNGLLKSAVETITLENGL 106


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +2

Query: 533 QYPHHNQILLSKTALNLCNKTPFPSS---PKRGRLIMTQFRSSSLVSHL 670
           +Y  HN+  L  + L L  KTP  S+   PK  ++ +T   SSS V HL
Sbjct: 76  EYNSHNKHALQNSQLPL-PKTPEKSTVHRPKANKVEVTDLPSSSSVEHL 123


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = -2

Query: 540 GYWRNIQPQKHI*L*TARSTRHSGRYNHRHRRQPLGGRVWRLMRAQDQS*KRRNPTKISN 361
           GY+ N+ P  +  +  +  T+ +    +++R Q   G++W L      S    N T  SN
Sbjct: 154 GYYTNLTPVFNSSILFSSITKINFSRGYKYRIQLTDGKIWFLYAFPTSSSSTFNLTLASN 213

Query: 360 SRRTSN 343
           S+ T++
Sbjct: 214 SQLTTS 219


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 382 SPFLGLILSTHEPPNTATQRLPSVSMVVPSGMP 480
           S  LGL+L       T+T  LP++S + PS MP
Sbjct: 442 SLLLGLVLDELVFSTTSTTPLPALSHLFPSNMP 474


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 717 TWRIFMTHSSSKQPPTRICFA 779
           T+R F T SS+K P   +CFA
Sbjct: 21  TFRKFTTESSTKSPIADVCFA 41


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
 Frame = -3

Query: 755  LFAGTMGHEDP---PGNFERNKASLYKLDSAKDGK----LEKMIETVSLS 627
            L    +G E+P   PGNF  +  SLY++  +  G+     E+++ET++ S
Sbjct: 1517 LLRTAVGGENPMALPGNFVNSITSLYEISESFSGETKQAYEQLVETMNKS 1566


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +1

Query: 376 RISPFLGLILSTHEPP---NTATQRLPSVSMVVPSGMP 480
           +ISPF+G+ ++TH+     +T   R+    ++V +G+P
Sbjct: 596 KISPFIGIFINTHQRAVFISTDGGRICRPLIIVQNGLP 633


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 486 STRHSG-RYNHRHRRQPLGGRVWRLMRAQDQS*KRRNPTKISNSR 355
           S +++G R NHR R QP   R W L+  +    +R    K    +
Sbjct: 4   SFKNAGQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKK 48


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 199 TLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTNKIS 315
           ++++  P TPS  TI   P   S  LP+   A+ T  IS
Sbjct: 187 SMSVPPPLTPSASTINDQPFSNSFDLPSQVIADGTGAIS 225


>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 602 EKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDF 498
           E+ FY  DSM F + K +  VDT  + + R++ ++
Sbjct: 321 EQLFYVMDSMGFEVLKHN-SVDTTYMGDKRSMLEW 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,435,604
Number of Sequences: 5004
Number of extensions: 73613
Number of successful extensions: 247
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)