Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_L23
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical pr...    38   0.008
Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical pr...    31   0.95 
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    30   1.7  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    30   1.7  
U80450-5|AAB37830.1|  587|Caenorhabditis elegans Kinesin-like pr...    29   5.1  
AB032080-1|BAA92263.2|  587|Caenorhabditis elegans kinesin like ...    29   5.1  
Z81595-1|CAB04753.2|  337|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical
           protein F21F3.1 protein.
          Length = 350

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 26/87 (29%), Positives = 41/87 (47%)
 Frame = -3

Query: 626 NGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRGLQGIPDGTTIDTD 447
           +G  WD  EK+F   ++    +   + +     IS  + + D    GL  +P G TID +
Sbjct: 79  SGRVWD--EKSFNDHETFNKDLGVIN-NKTIAIISREKKVIDEFGAGLFYMPHGLTIDNN 135

Query: 446 GNLWVAVFGGSCVLKINPKNGEILQKL 366
           G+ WV   G   V KI+ K  +I+  L
Sbjct: 136 GDYWVTDVGSHQVHKIDAKTQKIVMSL 162


>Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical
           protein M163.5 protein.
          Length = 435

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 29/118 (24%), Positives = 49/118 (41%)
 Frame = -3

Query: 662 KLEKMIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRGL 483
           +LEK  + + L  G  + L+  A +   + + +  K  + V+   + N  +  +     +
Sbjct: 115 RLEKSCKQLELIRGSMFSLQVDANFSNCNKKPTTAKLPFSVEYFIVENESDFIETFSNAM 174

Query: 482 QGIPDGTTIDTDGNLWVAVFGGSCVLKINPKNGEILQKLAIPAEQVTSATFGGPNLDI 309
              PDG+  D DG  ++A  G +   K   KN  I        EQ    TF  P L+I
Sbjct: 175 YASPDGSLYDADG--FIAPLGPA---KKKRKNAPIAAN-----EQQNDVTFIKPPLNI 222


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = -3

Query: 713 FERNKASLYKLDSAKDGKLEKMIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDT 534
           F   +  LY+L+     +  K + +     G+ +D  ++  ++TD +  S    D D D 
Sbjct: 398 FVARREGLYRLNPKNPDEEVKKLASGEFIYGIDFDYGDRKIFWTDRLAHSAFSADVD-DE 456

Query: 533 GEISNPRNI 507
           GEIS  + +
Sbjct: 457 GEISQIKKL 465


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = -3

Query: 713 FERNKASLYKLDSAKDGKLEKMIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDT 534
           F   +  LY+L+     +  K + +     G+ +D  ++  ++TD +  S    D D D 
Sbjct: 398 FVARREGLYRLNPKNPDEEVKKLASGEFIYGIDFDYGDRKIFWTDRLAHSAFSADVD-DE 456

Query: 533 GEISNPRNI 507
           GEIS  + +
Sbjct: 457 GEISQIKKL 465


>U80450-5|AAB37830.1|  587|Caenorhabditis elegans Kinesin-like
           protein protein 15 protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 27/98 (27%), Positives = 40/98 (40%)
 Frame = +1

Query: 196 LTLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTNKISRFGPPKVAEVTCSAGIANFC 375
           +T+   +   PS +     P  G  SLP  +++ +    S   P    + T S  I+   
Sbjct: 48  ITIGAAARRPPSRLPTPTTPATGRASLP--ERSAMAKPASCSRPIPTMQSTASR-ISTLT 104

Query: 376 RISPFLGLILSTHEPPNTATQRLPSVSMVVPSGMPCRP 489
             S F  L   T  PP  +TQR  + S + PS    RP
Sbjct: 105 AASTFRQL--RTGRPPPPSTQRSTATSSLKPSVTRARP 140


>AB032080-1|BAA92263.2|  587|Caenorhabditis elegans kinesin like
           protein-15 protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 27/98 (27%), Positives = 40/98 (40%)
 Frame = +1

Query: 196 LTLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTNKISRFGPPKVAEVTCSAGIANFC 375
           +T+   +   PS +     P  G  SLP  +++ +    S   P    + T S  I+   
Sbjct: 48  ITIGAAARRPPSRLPTPTTPATGRASLP--ERSAMAKPASCSRPIPTMQSTASR-ISTLT 104

Query: 376 RISPFLGLILSTHEPPNTATQRLPSVSMVVPSGMPCRP 489
             S F  L   T  PP  +TQR  + S + PS    RP
Sbjct: 105 AASSFRQL--RTGRPPPPSTQRSTATSSLKPSVTRARP 140


>Z81595-1|CAB04753.2|  337|Caenorhabditis elegans Hypothetical
           protein T22H2.1 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 492 LFKVKYVSGVGYFSSIHIIIKFC-YRKLH*ICVIKRLFLQVPSE 620
           L K+  V+GVG F+ + II  +C Y  +H + +++RL   + S+
Sbjct: 189 LNKMMAVTGVGAFAYVFIIAWYCFYLGVHTMIILQRLRQHMSSQ 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,267,497
Number of Sequences: 27780
Number of extensions: 429759
Number of successful extensions: 1175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)