Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_L22
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 291 6e-80
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 291 6e-80
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 194 2e-50
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 103 2e-23
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 46 5e-06
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 27 4.0
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 26 5.3
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.3
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 26 7.0
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 26 7.0
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 9.2
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 25 9.2
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 291 bits (715), Expect = 6e-80
Identities = 136/204 (66%), Positives = 152/204 (74%)
Frame = -1
Query: 764 ARKIWXFGPEGTGPNXXVDCSKGVQYLNEIKDSVVXGFQWAXKEGVMAEENLRGVRFNIY 585
ARKIW FGP+ TG N VD +K V YLNEIKDSVV F WA KEG M EENLR RFNI
Sbjct: 630 ARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNIL 689
Query: 584 DVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNR 405
DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A+GGIY VLN+
Sbjct: 690 DVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNK 749
Query: 404 RRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPC 225
+RGHVF E Q GTP++ +KAYLPVNESFGFT +LR T GQAFPQ VFDHW + GDP
Sbjct: 750 KRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPL 809
Query: 224 EPQSKPYNVVQETRKRKGLKEGLP 153
+P SKP +V E RKRKGLKE +P
Sbjct: 810 DPTSKPGQIVCEARKRKGLKENVP 833
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 291 bits (715), Expect = 6e-80
Identities = 136/204 (66%), Positives = 152/204 (74%)
Frame = -1
Query: 764 ARKIWXFGPEGTGPNXXVDCSKGVQYLNEIKDSVVXGFQWAXKEGVMAEENLRGVRFNIY 585
ARKIW FGP+ TG N VD +K V YLNEIKDSVV F WA KEG M EENLR RFNI
Sbjct: 630 ARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNIL 689
Query: 584 DVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNR 405
DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A+GGIY VLN+
Sbjct: 690 DVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNK 749
Query: 404 RRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPC 225
+RGHVF E Q GTP++ +KAYLPVNESFGFT +LR T GQAFPQ VFDHW + GDP
Sbjct: 750 KRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPL 809
Query: 224 EPQSKPYNVVQETRKRKGLKEGLP 153
+P SKP +V E RKRKGLKE +P
Sbjct: 810 DPTSKPGQIVCEARKRKGLKENVP 833
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 194 bits (472), Expect = 2e-50
Identities = 90/190 (47%), Positives = 121/190 (63%), Gaps = 4/190 (2%)
Frame = -1
Query: 764 ARKIWXFGPEGTGPNXXVDCSKGVQY----LNEIKDSVVXGFQWAXKEGVMAEENLRGVR 597
+R IW FGP+ G N D + LN +K+ + GFQW +EG + +E +R V
Sbjct: 742 SRSIWAFGPDDRGTNILRDDTLSTDVDKNVLNSVKEYIKQGFQWGTREGPLCDETIRNVN 801
Query: 596 FNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYG 417
F + DV L + I+RGGGQIIPT RR Y+ LTA PRLMEPVY+ E+ P ++ IY
Sbjct: 802 FRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYD 861
Query: 416 VLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 237
+L RRRGHV ++ G+P+++V+A +PV +S GF DLR +T GQA Q VFDHWQV+P
Sbjct: 862 LLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVP 921
Query: 236 GDPCEPQSKP 207
GDP + KP
Sbjct: 922 GDPLDKSIKP 931
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 103 bits (248), Expect = 2e-23
Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 20/193 (10%)
Frame = -1
Query: 746 FGPEGTGPNXXVDCSKGVQYL-----------NEIKDSVVXGFQWAXKEGVMAEENLRGV 600
FGP+ GPN D +K ++ +++ + VV FQ +G + E ++G+
Sbjct: 754 FGPKRVGPNILFDKTKKMRDFRRQSDETKLIPSDLSEYVVTAFQLITHQGPLCAEPVQGI 813
Query: 599 -----RFNIYDVTLHTDAIHRGG----GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQC 447
+F+I D + + + GQ+I + + L PRLM +Y C++Q
Sbjct: 814 CVSIDQFDISDDSEDSKLLTINNPQIPGQVISVVKESIRHGFLGWSPRLMLAMYSCDVQA 873
Query: 446 PEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQ 267
+G +YGV+++RRG V +E GTP FIVKA +PV ESFGF ++ T G A+PQ
Sbjct: 874 TSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQ 933
Query: 266 CVFDHWQVLPGDP 228
+F +++L +P
Sbjct: 934 LIFHGFEMLDENP 946
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 46.4 bits (105), Expect = 5e-06
Identities = 30/125 (24%), Positives = 56/125 (44%)
Frame = -1
Query: 653 FQWAXKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLME 474
F A K+G + ++ RF + D H ++ T L A P ++E
Sbjct: 619 FYEALKKGFLIGHPIKNCRFVLEDGAYHPVDSSELAFRL--ATISAFRTAFLQANPMVLE 676
Query: 473 PVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRS 294
P+ I P GG+ G L++R+ + + F ++A +P+N F +++D+R+
Sbjct: 677 PIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSMFSYSSDIRA 734
Query: 293 NTGGQ 279
T G+
Sbjct: 735 LTKGK 739
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 4.0
Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 4/139 (2%)
Frame = -2
Query: 643 PXRKELWLKRICVVLDSTSMM*HSILMPSIEV-VAKSFQQLEDACTHVC*LLS--PVLWS 473
P K+ W CV L+ H+ + P+++V + + D+ + ++ PV
Sbjct: 50 PQLKQTWQFNFCVDLNFLLENMHASVFPTVDVRITHGYDSKSDSLARLTAQMNHCPVNVK 109
Query: 472 LYIFVKFSVLK*LWXXXXXXXXXXXXTFSKSPRWQVHLCSL*RPTYLSMSRSVL-LPICV 296
LY SV +W S + +H +L P ++ MS+++ P+
Sbjct: 110 LY-----SVYVPMWGTHHSKIMVNFFK-DDSCQIVIHTANLVEPDWIGMSQAIFKTPLLY 163
Query: 295 PTPADRPSRSAYSTIGRSS 239
P D S S+ G S
Sbjct: 164 PKANDSLSTSSVPEYGNPS 182
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 526 VVGMIWPPPLWMASVWSVTS*MLNLTPRKFSSAITPSLXA 645
V G+ PPPL + S+ + + + + FS A+ PSL A
Sbjct: 305 VKGVTTPPPLEVISIDHLPTLLPRESSEAFSEALIPSLLA 344
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 5.3
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +3
Query: 450 LNFTKIYRLHKTGLSS*QTCVQASSSCWND-----LAT--TSMDGISMECYIIDVESNTT 608
L+++K++ LH +Q S S +ND LA ++ + + Y++ E +
Sbjct: 192 LSYSKVFFLH---------LLQHSDSSFNDKFLLLLANIPVTVSNVEVLLYLLQQEESLA 242
Query: 609 QILFSHNSFLXGPLESXHNRVLN 677
Q + SFL L S HN+V N
Sbjct: 243 QFDLNGKSFLYHMLVSLHNQVTN 265
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 528 CWNDLATTSMDGISMECYIIDVESNTTQI 614
CW++L+TTS + + II + TT I
Sbjct: 211 CWDELSTTSPESSKVSEPIIQDNTQTTHI 239
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 550 PLWMASVWSVTS*MLNLTPRKFSSAITPSLXAHWNPXTTESLISLRY 690
P W+A V ++ S + P FSS + +L A+ N + + + Y
Sbjct: 43 PFWLAEVLAINSFVSIHMPAPFSSVVRNALKANPNSVSIRDITTHYY 89
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 254 HWQVLPGDPCEPQSKPYNVVQETRKRK 174
H+Q L GDP + PY VQ RK
Sbjct: 78 HFQNLSGDPVSQMATPYPPVQIELMRK 104
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -1
Query: 536 IPTTRRCLYACLLTAQPRLMEPVYL-CEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTP 360
IP T RC+ + + + P+L P L + CP + + V+ H F + P
Sbjct: 386 IPNTERCILSAFICSPPQLPLPNPLRMYLPCPSLNSTEV-SVITLAPQHSFLNIVINLNP 444
Query: 359 MFIVKAY 339
+K+Y
Sbjct: 445 ALALKSY 451
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,355,927
Number of Sequences: 5004
Number of extensions: 72234
Number of successful extensions: 161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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