Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_L18
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    27   2.9  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    27   3.8  
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    26   6.6  
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c...    25   8.8  

>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 87  LFFCTSTVKCSIKKNNYIHGWI*VLLY 167
           +FF   +VKC + +    HGW+  L+Y
Sbjct: 361 VFFEMQSVKCKVAQEIQDHGWLKKLIY 387


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 494 LRNISGKCYFLILLTSIFKKKNFTMEKLSI 405
           L+N+   CY    + S+F  K F + +L++
Sbjct: 302 LKNLGNSCYLASTMQSLFSIKEFAIHELNL 331


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 593 CGALLFDAVFLYHSFVLVSETEMLWYNVKINVTLRNISGKCYF 465
           CG   F    +   FVL   T +  +NV +N   ++ SGK  F
Sbjct: 132 CGFQTFLDTVILSLFVLCGLTRLARFNVSVNSIPKDGSGKSQF 174


>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 391 FECYVTSMLCSCNFRFSPG 335
           F+C V ++ C C F FS G
Sbjct: 39  FDCIVVTIYCGCLFWFSNG 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,010
Number of Sequences: 5004
Number of extensions: 50718
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)