Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_L18
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0995 + 7875273-7875495,7876196-7876274,7876422-7876536,787...    29   3.0  
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767...    29   5.2  
11_06_0057 + 19683226-19684055,19685742-19687824                       28   6.9  
07_03_0871 - 22183149-22183232,22183706-22183964,22184012-221840...    28   9.2  
06_03_1012 - 26893828-26894052,26894137-26894355,26894513-268946...    28   9.2  

>01_01_0995 +
           7875273-7875495,7876196-7876274,7876422-7876536,
           7878507-7878761
          Length = 223

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 372 ACCVVVISDFRPVPTVIIEIDGIKNVEHAEKSVLYYIKSLSINIEWEGRRSR 217
           AC +  I   R +P V IE+D +    + EK +     +  ++ +WE +R R
Sbjct: 135 ACAIADIDTIRLIP-VHIEMDDVLAWHYDEKGLFLVKSAYKVHRDWERQRQR 185


>04_03_0554 -
           17075142-17075159,17075788-17076591,17076619-17076719,
           17077095-17077751,17077827-17078768,17078837-17078896,
           17079131-17079763,17079886-17079942,17080177-17080702
          Length = 1265

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 303 KNVEHAEKSVLYYIKSLSINIEWEGRRS 220
           KNV H E+  L Y ++ S  I W+ R S
Sbjct: 120 KNVAHEERQALVYRQNESFTIRWDTRTS 147


>11_06_0057 + 19683226-19684055,19685742-19687824
          Length = 970

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = -3

Query: 390 LNVMLQACCVVVISDFRPVPTVIIE-IDGIKNVEHAEKSVLYYIKSLSINIEW 235
           L++ +QAC +  +SDFR +  + +E   G+ +    + S+L+++K LS+   W
Sbjct: 561 LSLYVQACQLPPLSDFRVLRVLNLEGCLGLCDNHLKDISILFHLKYLSLCRTW 613


>07_03_0871 -
           22183149-22183232,22183706-22183964,22184012-22184091,
           22184308-22184667,22184757-22184900,22184986-22185141,
           22185236-22185401,22185480-22185512,22186188-22186270,
           22186341-22186443,22186540-22186628
          Length = 518

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 560 YHSFVLVSETEMLWYNVKINVTLRNISGKCYFLILLTS 447
           Y  FVL +     ++  K+N  LRN++G  Y L  L+S
Sbjct: 170 YQPFVLRTTAIFTYHEAKVNTRLRNLAG--YTLFFLSS 205


>06_03_1012 -
           26893828-26894052,26894137-26894355,26894513-26894652,
           26894790-26895198
          Length = 330

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +3

Query: 591 AINSHAVFAHLHSVTKYLINVHLRIRSSLQ*INDPQSALTSER 719
           A+ +H V+AH  + ++ L+  HL +R  L+ +  PQ   ++++
Sbjct: 178 AVTAHTVYAHKETCSEELLVEHL-VRKGLEQVVIPQGGASNQK 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,532,166
Number of Sequences: 37544
Number of extensions: 265632
Number of successful extensions: 428
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)