Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_L18
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-5|CAA93739.2|  260|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of l...    29   4.7  

>Z69883-5|CAA93739.2|  260|Caenorhabditis elegans Hypothetical
           protein C27C12.6 protein.
          Length = 260

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 105 LMYRKKENTYDVNKVAKCTLFRTLFCFEKKNVL 7
           L  +K E TY+++  +   L  TLFC  +K+VL
Sbjct: 130 LKRKKVEETYELSSFSPIELLMTLFCEHEKHVL 162


>U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform c protein.
          Length = 523

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 360 VVISDFRPVPTVIIEIDGIKNVEHAEKSVLYYIKSLSINIEWEGRRSRITIAHIE 196
           V+I  F+P P   +EI+  KNV  AEK ++  +  +      +   S + I  +E
Sbjct: 423 VIIDRFKPTP---VEIEKAKNVAAAEKKLISLVPDVPPRTSSQTSSSYVNIKELE 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,940,204
Number of Sequences: 27780
Number of extensions: 286956
Number of successful extensions: 628
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)