Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_L14
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine rece...    31   0.78 
Z81491-6|CAE17746.1|  185|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U23168-7|AAC38808.1|  115|Caenorhabditis elegans Hypothetical pr...    28   7.3  
DQ241299-1|ABB45863.1|  115|Caenorhabditis elegans TRX-1a protein.     28   7.3  
AF016449-15|AAG24002.1|  496|Caenorhabditis elegans Cytochrome p...    27   9.6  

>U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein77 protein.
          Length = 313

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 301 KKKESYHLPCLVAILNLTQVMHIVTIIYSPFCII 402
           K+K S++L C+   +N   ++ I+TI+Y P  II
Sbjct: 46  KQKTSFNLVCVFRSINNVAIIFILTIVYIPAIII 79


>Z81491-6|CAE17746.1|  185|Caenorhabditis elegans Hypothetical
           protein D1086.8 protein.
          Length = 185

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 234 HVSFEHHDHILIKEACKTIPHY*KKRILPSTMFGCNIESYTSYAHCDHNI-LTILYYKVS 410
           H SF   DHI I + CKT     K  +  S +   ++++ T    CD+ + LT  +Y  S
Sbjct: 61  HESFTASDHIGINQNCKTSLTCLKTNVGCSNISQNDVDTLTK--KCDYMLYLTGGFYACS 118

Query: 411 QA*KTKK 431
           Q  K +K
Sbjct: 119 QKLKNRK 125


>U23168-7|AAC38808.1|  115|Caenorhabditis elegans Hypothetical
           protein B0228.5a protein.
          Length = 115

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 264 KCDHDAQMKHDEKSFTLI--QGPLKVTVLDISFFWCG 160
           +C+   Q+K+ +  F  +  Q P K+ +LD    WCG
Sbjct: 4   RCNFKNQVKYFQSDFEQLIRQHPEKIIILDFYATWCG 40


>DQ241299-1|ABB45863.1|  115|Caenorhabditis elegans TRX-1a protein.
          Length = 115

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 264 KCDHDAQMKHDEKSFTLI--QGPLKVTVLDISFFWCG 160
           +C+   Q+K+ +  F  +  Q P K+ +LD    WCG
Sbjct: 4   RCNFKNQVKYFQSDFEQLIRQHPEKIIILDFYATWCG 40


>AF016449-15|AAG24002.1|  496|Caenorhabditis elegans Cytochrome p450
           family protein 33C9 protein.
          Length = 496

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 223 FYINSRSFESYSFRYKFFLVW 161
           F  NS  F S+S R +FFL W
Sbjct: 200 FNFNSGEFASFSMRVQFFLPW 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,490
Number of Sequences: 27780
Number of extensions: 279001
Number of successful extensions: 567
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)