Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_L10
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   3.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.7  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   8.2  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   8.2  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 298 AKKSTTTGTLLLITFSLKSSVLWIFTMSFFDAVREK 405
           A+  T  G    +  SLK+ +LW F    F +V  K
Sbjct: 94  AEHFTALGNFYFVHESLKNVLLWDFQECTFISVNGK 129


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 292 HVAKKSTTTGTLLLITFSLKSSVLWI 369
           H +  STT  TL ++  ++    LW+
Sbjct: 242 HYSMNSTTYVTLTIVLMTMTLMTLWL 267


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/38 (18%), Positives = 22/38 (57%)
 Frame = -2

Query: 532 PADDQIICNIA*CIVFTKCLPKILLTYSFEIVH*KKIM 419
           P D++++C +   ++ TK +   ++ + F + + + I+
Sbjct: 63  PQDERLMCYMKCIMIATKAMKNDVILWDFFVKNARMIL 100


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/38 (18%), Positives = 22/38 (57%)
 Frame = -2

Query: 532 PADDQIICNIA*CIVFTKCLPKILLTYSFEIVH*KKIM 419
           P D++++C +   ++ TK +   ++ + F + + + I+
Sbjct: 37  PQDERLMCYMKCIMIATKAMKNDVILWDFFVKNARMIL 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,377
Number of Sequences: 438
Number of extensions: 2521
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)