Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_L09
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   2.2  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   2.9  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    27   3.8  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   6.6  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   6.6  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   6.6  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   8.7  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    25   8.7  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = -1

Query: 626  IWDKKVRNGHIKRITDNDIQSLVLE-IVGTNVSTTYITCPADPKKTLGIKLPFLVMIIKN 450
            I +K + +G + +   N +Q++ +    G+NV+ + I+C    ++  G ++P +V   K+
Sbjct: 920  IINKCIPDGLLTKFPYNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVS-GKS 978

Query: 449  LKKYFTFEVQVLDDKNVRRRF 387
            L  +  +E        +  RF
Sbjct: 979  LPSFVPYETSAKSGGFIASRF 999


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
 Frame = -1

Query: 401 VRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLADFTRRAYG--TNYVETLRVQI 228
           +RRRF A++ Q    VKP+   + +  DE W   +       +R  G   + +E ++  +
Sbjct: 685 LRRRFHATSEQVENCVKPYKYDVEVNDDE-WKSSRGQAEKLLQRELGLCQSALEKIKNAV 743

Query: 227 HANCRIRRV--YFSDRLYSEDELPAEFKLFL 141
            +  R+ +V  Y  ++  S + LPA +   L
Sbjct: 744 GSR-RMNQVLQYLEEQKTSSEPLPASYSTAL 773


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 282 VSQVELYLVPAFVQPHGHSTDERLNPCCRLVV 377
           VSQV  ++VP  + P  H+  ER   CC+  +
Sbjct: 350 VSQVNFHIVPFIMDPTSHNWVER---CCKKAI 378


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/79 (20%), Positives = 33/79 (41%)
 Frame = -1

Query: 386 RASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLADFTRRAYGTNYVETLRVQIHANCRIR 207
           ++  +   T   PF     +   E    +Q  +AD++R+ Y   Y  T+  +    C+  
Sbjct: 691 QSERFPGPTPFSPFRSFQELSPSEQAAMVQKRIADYSRKVYHRLYDNTVIERETIICQKE 750

Query: 206 RVYFSDRLYSEDELPAEFK 150
             ++ D + S  +   +FK
Sbjct: 751 NSFYIDTVKSFRDRRYDFK 769


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 526 VVLTFVPTISSTRLCISLSVILFMCPLRTFLSQI 627
           ++L F P I+ T +   L++I   C L  F+S++
Sbjct: 114 LILLFSPYIAITSMARLLTLITLFCSLVCFISEV 147


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 446 LNFLLS*PKKVTLFQGSSLDPPGMLC 523
           LN LLS PK   L Q S+LD    +C
Sbjct: 120 LNSLLSDPKSSPLMQSSTLDGVSSVC 145


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +3

Query: 180 IQSVGEINSSYSAVCMYLDS*GLNIVSAVSSSCEVSQVELYLVPAFVQPHGHSTDERLN 356
           ++ + + N +YS    +     + I S +SS  + S  + YL+P  +  H  S + RL+
Sbjct: 423 VEPIEDCNEAYSLSSKFHFKKEILIASQLSSHLDYSTFKNYLMPLAITLHFISEELRLD 481


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 513 ACYVRGTDVRSHDFEHQALYIVICYPLYVPIANFFV--PNLQRFAAYDL 653
           AC VR T        H+A+Y V+C  + +P+  F +  P LQ  A +++
Sbjct: 154 AC-VRTTVQNGRSVYHRAVYWVMCMVIGIPLLIFLLISPVLQTPALWEI 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,260
Number of Sequences: 5004
Number of extensions: 57012
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)