Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_L08
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    28   1.4  
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    27   1.8  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.2  
SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    26   5.6  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   7.5  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.5  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.5  

>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 582 LLQDQCTK*CHTSSVAVNAMAILLSDFLLASKAK 481
           L  DQC+K  H+S++  N  AI LS+ +  S AK
Sbjct: 96  LAADQCSKLVHSSNLFYNEPAIELSNVINNSLAK 129


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 338 TFKSTFITF-KMAQYFHSFIRISTSKQIVNKSVHHTNVYLIWESNPRYFFAFD 493
           T+++ ++ F K  Q     + ++ + ++     HH N Y IWES+    +  D
Sbjct: 28  TYETRYVNFSKNEQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLAD 80


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 456 SGNRTHDIFLLLMPTKNLKVISPSHSRPRNLYDIISCIDLE 578
           SGN   D FL L+   NL     + + PR    I + +DLE
Sbjct: 283 SGNVAFDEFLSLLHAGNLVQAMNAETNPRTAELIANAVDLE 323


>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/68 (23%), Positives = 33/68 (48%)
 Frame = +2

Query: 359 TFKMAQYFHSFIRISTSKQIVNKSVHHTNVYLIWESNPRYFFAFDANKKSESNIAIAFTA 538
           T  +A+ FHS   + +S  +       + +YL+W     + +  + +    S I IA++ 
Sbjct: 54  TLAIAEVFHSIFGLVSSSPLTTIIQVASRLYLVWGVCYPFSYVIEGSPIYLSMI-IAWSI 112

Query: 539 TELV*HYF 562
           TE++ + F
Sbjct: 113 TEIIRYAF 120


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 455 IWESNPRYFFAFDANKKSESNIAIAFTATEL 547
           +W+S P+Y      NKK E ++   F A EL
Sbjct: 127 VWDSPPKYIRVLSHNKK-EKSLDHLFLAQEL 156


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 103 FEKSPDKQKILAISIHNNTIQCESGIGGLLRFHVLTTQL 219
           FE+S +K+ +  +  ++ T+   SGI  LL F V+  QL
Sbjct: 125 FEESQNKKLVALLDKNSTTLDISSGI--LLNFTVVLKQL 161


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 183 WFVALSCFNYPAGQDEIFRTNCKI 254
           WFVA S    P  Q  +  T+CK+
Sbjct: 17  WFVAKSQIKKPVDQRPVILTHCKL 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,958
Number of Sequences: 5004
Number of extensions: 64555
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)