Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_L08
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    29   3.0  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    29   3.0  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    29   3.0  
AF045640-8|AAC02571.1|  394|Caenorhabditis elegans Hypothetical ...    28   6.9  
L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleo...    27   9.1  
AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc fi...    27   9.1  

>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
            protein 2, isoform c protein.
          Length = 1926

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 661  IRPADEVSGLNSVQYKIISKQHSRQNPASRSMHEIMSYKFRGRECD 524
            I+   +   +  VQY+ + +QH + N   R + ++ S   RG   D
Sbjct: 1553 IKSGKQDGDVTDVQYQSVDQQHEKMNSTGRRLSDMFSKIRRGTSAD 1598


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 661  IRPADEVSGLNSVQYKIISKQHSRQNPASRSMHEIMSYKFRGRECD 524
            I+   +   +  VQY+ + +QH + N   R + ++ S   RG   D
Sbjct: 1672 IKSGKQDGDVTDVQYQSVDQQHEKMNSTGRRLSDMFSKIRRGTSAD 1717


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 661  IRPADEVSGLNSVQYKIISKQHSRQNPASRSMHEIMSYKFRGRECD 524
            I+   +   +  VQY+ + +QH + N   R + ++ S   RG   D
Sbjct: 1672 IKSGKQDGDVTDVQYQSVDQQHEKMNSTGRRLSDMFSKIRRGTSAD 1717


>AF045640-8|AAC02571.1|  394|Caenorhabditis elegans Hypothetical
           protein C11D2.2 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 275 LARRNH-TCSVGPKLDK*IHSYTFKSTFITFKMAQYFH 385
           L R+ H TC +GP +   +HS +FKS   T    Q+ H
Sbjct: 21  LVRKEHSTCLMGPVVSNRLHSSSFKSKH-TIHKGQHQH 57


>L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleoli
           protein 1 protein.
          Length = 851

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 284 SELIFFLLFCNLTIC 240
           SEL+FF + CNL IC
Sbjct: 229 SELVFFCVSCNLAIC 243


>AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc
           finger protein Ncl-1 protein.
          Length = 851

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 284 SELIFFLLFCNLTIC 240
           SEL+FF + CNL IC
Sbjct: 229 SELVFFCVSCNLAIC 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,159,917
Number of Sequences: 27780
Number of extensions: 352898
Number of successful extensions: 714
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)