Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_L07
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 286 3e-78
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 136 2e-33
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 122 4e-29
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 117 1e-27
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 9e-21
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 77 3e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 73 4e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 70 3e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.3
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.3
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 8.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 286 bits (701), Expect = 3e-78
Identities = 133/152 (87%), Positives = 140/152 (92%)
Frame = -1
Query: 722 EQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIM 543
EQE+ T A SSSLEKSYELPDGQVITIGNERFR PEALFQPS LG+E GIHE TYNSIM
Sbjct: 224 EQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIM 283
Query: 542 KCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 363
KCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGG
Sbjct: 284 KCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGG 343
Query: 362 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 267
SILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 344 SILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 136 bits (330), Expect = 2e-33
Identities = 61/137 (44%), Positives = 93/137 (67%)
Frame = -1
Query: 677 SYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTV 498
+Y+LPD Q IT+G E F PE LF P +G EA G+H + SI+ D+D+R LY+N V
Sbjct: 244 TYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIV 303
Query: 497 LSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 318
LSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+
Sbjct: 304 LSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLIT 363
Query: 317 KQEYDESGPSIVHRKCF 267
+EY ++ +++ R+ F
Sbjct: 364 SEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 122 bits (295), Expect = 4e-29
Identities = 63/143 (44%), Positives = 93/143 (65%), Gaps = 12/143 (8%)
Frame = -1
Query: 686 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYA 507
L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY
Sbjct: 236 LMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYR 295
Query: 506 NTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGS 360
VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG+
Sbjct: 296 AIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGA 355
Query: 359 ILAS-LSTFQQMWISKQEYDESG 294
+LA ++ MW+SK E++E G
Sbjct: 356 VLADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 117 bits (282), Expect = 1e-27
Identities = 62/146 (42%), Positives = 83/146 (56%), Gaps = 11/146 (7%)
Frame = -1
Query: 698 SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYNSI 546
+SS K +E PDG G ERFR E LF PSF + G+HE Y SI
Sbjct: 273 ASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSI 332
Query: 545 MKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVW 372
+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + + +VW
Sbjct: 333 LACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVW 392
Query: 371 IGGSILASLSTFQQMWISKQEYDESG 294
GGSILASL FQ +W+SKQEYDE G
Sbjct: 393 FGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 9e-21
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -1
Query: 575 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 396
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 395 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 270
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 77.0 bits (181), Expect = 3e-15
Identities = 42/128 (32%), Positives = 64/128 (50%)
Frame = -1
Query: 656 QVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 477
QV+ + NERF PE LF PS + + GI E S+ +I+ L N V GG
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
Query: 476 YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 297
+PG R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEH 390
Query: 296 GPSIVHRK 273
G +I+ RK
Sbjct: 391 GANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 72.9 bits (171), Expect = 4e-14
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Frame = -1
Query: 650 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 474
I +G ERF PE F P + + E N + +D+RK LY N VLSGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 473 PGIADRMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTF 336
+R+Q+++ + + + +I+ ++ +VW GGS+LA F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
Query: 335 QQMWISKQEYDESGPSIVHR 276
+K +Y+E G SI R
Sbjct: 400 GSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.1 bits (164), Expect = 3e-13
Identities = 31/118 (26%), Positives = 62/118 (52%)
Frame = -1
Query: 635 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 456
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 455 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 282
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 521 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 351
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 350 SLSTFQQMWISKQEYDESGPSIVHRK 273
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 374 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 273
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 382 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 287
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 449 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 339
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -3
Query: 492 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 313
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 312 GV 307
V
Sbjct: 534 AV 535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,481
Number of Sequences: 5004
Number of extensions: 60479
Number of successful extensions: 201
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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