Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_L05
(466 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946 34 0.065
08_01_0641 - 5557036-5557163,5557227-5557348,5557410-5557714 30 1.1
03_05_0092 - 20714102-20717902 27 5.6
02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658... 27 5.6
02_03_0102 - 15238808-15239437,15241609-15243264 27 5.6
03_03_0198 + 15361048-15361746,15361854-15361946,15362035-153621... 27 7.4
01_06_0968 + 33466574-33466607,33467087-33467115,33467438-334675... 27 7.4
01_06_0292 + 28243408-28243543,28243631-28243760,28243860-28244550 27 7.4
12_02_0614 - 21172290-21172480,21174927-21175164 27 9.8
10_06_0038 - 9958520-9958763,9959240-9959394 27 9.8
02_01_0091 + 646299-649082 27 9.8
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 27 9.8
>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
Length = 447
Score = 33.9 bits (74), Expect = 0.065
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 300 LKQTKRNAGHGVWTYRVPPPMPSKKSIRLAQ 208
L R AGH VW PPP P ++ ++LAQ
Sbjct: 118 LPHLPRGAGHEVWPPHHPPPPPQQQQLQLAQ 148
>08_01_0641 - 5557036-5557163,5557227-5557348,5557410-5557714
Length = 184
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -2
Query: 225 SIRLAQGLGGLCWWWILYHIATEPEH--ITGEWPYIDPSTWTDEELGIPPDSAG 70
S+ L G G L WWW +A+ + + G + P+T E L PP S+G
Sbjct: 32 SLSLCAGCG-LGWWWCFVPLASVRDDGVVAGVGDVVVPATELAEALLRPPPSSG 84
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 27.5 bits (58), Expect = 5.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 286 TKCRTWSLDVPCTATNA 236
TKC +W L PC+ +NA
Sbjct: 836 TKCPSWMLKTPCSLSNA 852
>02_04_0454 +
23064081-23064139,23064297-23064366,23064553-23065815,
23065946-23066515
Length = 653
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 198 HQALELTESIFWKALVAVHGTSKLH 272
H EL +FW+ +VAV T +H
Sbjct: 191 HDVAELGVDLFWRIMVAVKATGAVH 215
>02_03_0102 - 15238808-15239437,15241609-15243264
Length = 761
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 3 LTNNSKTSFVQXLISFCINALCILLNQEEFQAL 101
+T+N+ SFV +I F + L +++ Q+ F L
Sbjct: 643 MTSNNYDSFVHLIIDFIVKRLEVIMMQKRFSQL 675
>03_03_0198 +
15361048-15361746,15361854-15361946,15362035-15362102,
15362255-15362393,15362481-15362483
Length = 333
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -2
Query: 279 AGHGVWTYRVPPPMPSKKSIRLAQGLG-GLCWWWILY 172
AG G + PP P+++ + L G G W W Y
Sbjct: 57 AGAGTSVHVWAPPRPARRPVLLLHGFGASTTWQWASY 93
>01_06_0968 +
33466574-33466607,33467087-33467115,33467438-33467595,
33468319-33468436,33468520-33468708,33469008-33469343,
33469468-33469569,33469696-33469890,33469993-33470155,
33470314-33470579,33470670-33470765,33470860-33471255,
33471403-33471501
Length = 726
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 243 PMPSKKSIRLAQGLGGLCWWWILYHIATEPEHIT 142
P+P +K+ L + L C W +L H + E +T
Sbjct: 512 PLPMRKTFDLLRNLTHRCKWDVLVHGSVVKEEVT 545
>01_06_0292 + 28243408-28243543,28243631-28243760,28243860-28244550
Length = 318
Score = 27.1 bits (57), Expect = 7.4
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = +2
Query: 179 IHHQHNPPSP*ANRIDFLEG---IGGGTRY-VQTPCPAFRLVCFKQPASPAFCS 328
+HH H PP P GGG R + +P PA + C SPA S
Sbjct: 120 MHHHHQPPPPQQQHYHHHHHHRVAGGGARVTLVSPPPAPQSQCASMQPSPASAS 173
>12_02_0614 - 21172290-21172480,21174927-21175164
Length = 142
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 321 NAGD-AGCLKQTKRNAGHGVWTYRVPPPMPSKKS 223
NAGD GCL ++KR G Y+ P P +KS
Sbjct: 65 NAGDEGGCLSRSKR-IGRAEEPYKSPNPQTLEKS 97
>10_06_0038 - 9958520-9958763,9959240-9959394
Length = 132
Score = 26.6 bits (56), Expect = 9.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -2
Query: 201 GGLCWWWILYHIATEPEHI 145
GG+CWWW + P+ +
Sbjct: 97 GGVCWWWSMSASVGGPQQL 115
>02_01_0091 + 646299-649082
Length = 927
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = -2
Query: 312 DAGCLKQTKRNAGHGVWTYRVPPPMPSKK-SIR 217
D GCL GVW Y P PS SIR
Sbjct: 605 DKGCLMNNPSGGDSGVWKYIGPDKKPSHSVSIR 637
>01_06_0276 -
28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -1
Query: 304 LLETNQTKCRTWSLDVPCTATNAFQKIDSVSSRAW 200
LLET + +C +L+ P + + + I ++ R W
Sbjct: 646 LLETTEKQCNRLALEGPLVSIDEMEAIKKMNYRGW 680
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,281,248
Number of Sequences: 37544
Number of extensions: 316507
Number of successful extensions: 856
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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