Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_L05
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   2.8  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    22   2.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   4.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   6.5  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   6.5  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   6.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   8.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.6  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 431 WESVLPLQNLSRKPT 387
           WE V  LQNL +K T
Sbjct: 232 WEEVYILQNLQKKRT 246


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 174 YHIATEPEHITGEWPYID 121
           YH+A  P H++   P +D
Sbjct: 5   YHVAQLPHHLSPNMPTMD 22


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 316 WRRWLLETNQTKCRTWSLD 260
           +R+W  +T    C T+ LD
Sbjct: 654 FRKWAADTFAVACETFCLD 672


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 227 FLEGIGGGTRYVQTPCPAF 283
           F E I  G+ Y+QT  PA+
Sbjct: 322 FEEDINEGSNYMQTRVPAW 340


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 295 TNQTKCRTWSLDVPCTAT 242
           T  T C+ W++D  C  T
Sbjct: 181 TAATDCQLWAIDRQCFQT 198


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding
          protein ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = +3

Query: 3  LTNNSKTSFVQXLISFCINALCI 71
          + +N+K +F+  L   C++A+ +
Sbjct: 1  MASNTKQAFIYSLALLCLHAIFV 23


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
          protein ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = +3

Query: 3  LTNNSKTSFVQXLISFCINALCI 71
          + +N+K +F+  L   C++A+ +
Sbjct: 1  MVSNTKQAFIYSLALLCLHAIFV 23


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 316 WRRWLLETNQTKCRT 272
           W R++ E N T C T
Sbjct: 190 WNRYVPEGNMTACGT 204


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 316 WRRWLLETNQTKCRT 272
           W R++ E N T C T
Sbjct: 66  WNRYVPEGNMTACGT 80


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 296 FKQPASPAFCS 328
           FKQP  P++C+
Sbjct: 3   FKQPNRPSYCT 13


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,608
Number of Sequences: 438
Number of extensions: 3031
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)