Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_K24
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    29   0.64 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   7.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.9  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.9  

>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = -2

Query: 509 CFPAGCSATPRPRCTGNMATTTWSTRPLAG*ECCRPGTCTSAASSGP---TWATTRAWLK 339
           CFP   S  P P   G+ AT+T S  P          T TS++ S     T +T  +   
Sbjct: 124 CFPYATSDAPNPIPRGDSATST-SIAPTYSASDSSATTITSSSPSTSIIGTGSTDTSVSS 182

Query: 338 TFTARTPVPPSFTRSS 291
           T T  TP+    T S+
Sbjct: 183 TLTYHTPIASPTTSSN 198


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/61 (31%), Positives = 23/61 (37%)
 Frame = -2

Query: 392 TSAASSGPTWATTRAWLKTFTARTPVPPSFTRSSQASRKGK*ICTTTPMPAESFKRNRCS 213
           TS+ SS  T  T      TFT       +FT S         I T+ P    SF  +  S
Sbjct: 421 TSSNSSYTTTLTASNTTVTFTGTGTGSATFTSSPPFYSNSSVIPTSAPSSVSSFTSSNSS 480

Query: 212 Y 210
           Y
Sbjct: 481 Y 481


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 24/114 (21%), Positives = 44/114 (38%)
 Frame = -2

Query: 554 LCTTARSSRTSGPTCCFPAGCSATPRPRCTGNMATTTWSTRPLAG*ECCRPGTCTSAASS 375
           L TT  ++ TS P    P   +      CT + +    ST P+          CT++ S 
Sbjct: 445 LATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTST-PVTSTPLTTTN-CTTSTSV 502

Query: 374 GPTWATTRAWLKTFTARTPVPPSFTRSSQASRKGK*ICTTTPMPAESFKRNRCS 213
             T     +   T ++ TPV  +   ++  +     + T+TP+ +       C+
Sbjct: 503 PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCT 556


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 427 WQDKSAAVRGPVHQRPQVVRHGQLH 353
           W    + ++ PV QRP ++ H +LH
Sbjct: 17  WFVAKSQIKKPVDQRPVILTHCKLH 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,795
Number of Sequences: 5004
Number of extensions: 51070
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)