Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_K24
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0017 + 21546434-21546841 32 0.50
01_03_0311 + 14905995-14906393,14906982-14907009,14907893-149079... 32 0.50
12_01_0719 - 6344651-6344809,6344872-6345286,6345967-6346133 31 0.66
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117... 31 1.1
03_02_0335 - 7579319-7579580,7580384-7581074,7581183-7581240 29 2.6
08_02_1044 + 23913849-23915090 29 4.6
07_03_1107 - 24024387-24024497,24025799-24026410 29 4.6
07_03_0015 - 12447947-12448393 29 4.6
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 29 4.6
05_01_0137 + 917533-917814,918080-918352 29 4.6
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 29 4.6
02_02_0652 - 12651163-12653210,12653327-12653627 28 6.1
01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265... 28 8.1
>05_05_0017 + 21546434-21546841
Length = 135
Score = 31.9 bits (69), Expect = 0.50
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -2
Query: 440 STRPLAG*ECCRPGTCTSAASSGPTWATT--RAWLKTFTARTPVPPSFTRSSQAS 282
S PL+ E CRPG A SS P ATT TA P P + +SS A+
Sbjct: 57 SPAPLSTPELCRPGEPVPAPSSSPAGATTTPAPAAPAATAPAPSPEADGKSSGAA 111
>01_03_0311 +
14905995-14906393,14906982-14907009,14907893-14907930,
14908741-14908878,14909180-14909356,14909497-14909550,
14909713-14909813,14910445-14910739
Length = 409
Score = 31.9 bits (69), Expect = 0.50
Identities = 22/49 (44%), Positives = 22/49 (44%)
Frame = -2
Query: 482 PRPRCTGNMATTTWSTRPLAG*ECCRPGTCTSAASSGPTWATTRAWLKT 336
P T TT RPLA RP T AA S P ATTR WL T
Sbjct: 24 PAVATTWTRPVTTARLRPLAAVTRTRPVT---AARSRPVAATTRTWLAT 69
>12_01_0719 - 6344651-6344809,6344872-6345286,6345967-6346133
Length = 246
Score = 31.5 bits (68), Expect = 0.66
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +1
Query: 226 LLKLSAGIGVVVHIYFPFLLAWLDRVNEGGTGVLAVNVFSHARVVAHV-GPLEAADVQVP 402
L+ +SA V V + FP+ L+WL + + G+ + + ++R+ V L ADV
Sbjct: 115 LMNISAPATVAVWLGFPYHLSWLS-IFKQGSSLCSWEPELYSRITGRVHQKLSVADVLAN 173
Query: 403 GRQHSYPAKGLVDQVVVAILPVHLGLGVAEHPAG 504
R L Q ++ L V LGV HP G
Sbjct: 174 NRWIRDLRGSLGVQAILQYLQVG-KLGVVFHPLG 206
>01_06_0789 -
32010131-32010330,32010438-32010866,32011658-32011752,
32011836-32011933,32012586-32012942,32013615-32013792,
32013856-32013936,32014441-32014548,32014916-32015178
Length = 602
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = -3
Query: 361 QLHVRG*KHLRQGHRFHLHLPGQAKQVEKENKYVRPRQCPPKVSKEIDVP 212
QLH RG +R H H+ LP A V VRP Q P + VP
Sbjct: 38 QLHPRGLPVMRSHHVVHVPLPRPAVAVAVPVPQVRPAQPQPVPRPPVAVP 87
>03_02_0335 - 7579319-7579580,7580384-7581074,7581183-7581240
Length = 336
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/78 (24%), Positives = 28/78 (35%)
Frame = -2
Query: 515 TCCFPAGCSATPRPRCTGNMATTTWSTRPLAG*ECCRPGTCTSAASSGPTWATTRAWLKT 336
T C AGC+A RC + + A +P C S A + P A+ +
Sbjct: 152 TTCAAAGCAADLNARCPAELRAVGGAACRSACDAFGKPEFCCSGAYANPNTCRPTAYSQV 211
Query: 335 FTARTPVPPSFTRSSQAS 282
F + P S+ S
Sbjct: 212 FKSACPRSYSYAYDDPTS 229
>08_02_1044 + 23913849-23915090
Length = 413
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 407 RPGTCTSAASSGPTWATTRAWLKTFTARTPVPPSFTRSSQASRKGK 270
R G SG W+ + ++TF+AR P S R ++A GK
Sbjct: 336 RAGRSVRLGQSG-RWSNVSSLMRTFSARLPAWGSARRGAEADSPGK 380
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 28.7 bits (61), Expect = 4.6
Identities = 28/107 (26%), Positives = 40/107 (37%)
Frame = -2
Query: 554 LCTTARSSRTSGPTCCFPAGCSATPRPRCTGNMATTTWSTRPLAG*ECCRPGTCTSAASS 375
LC A S+ T PA AT P A++ + P A P ++ ++
Sbjct: 12 LCLVAASASAQKATPT-PAAAPATTPP------ASSKKTPAPAAAPTTTTPPAASTPPAA 64
Query: 374 GPTWATTRAWLKTFTARTPVPPSFTRSSQASRKGK*ICTTTPMPAES 234
PT T A + T P T+S++A TP PA S
Sbjct: 65 APTTPATPAPAEAPTTPAPTKAPPTKSTKAPAPAPKAAKATPPPASS 111
>07_03_0015 - 12447947-12448393
Length = 148
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 582 EASPSLISPPRHRQCTQWWWR 644
EA P PPR C +WWWR
Sbjct: 32 EARPRATLPPR---CRRWWWR 49
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 491 SATPRPRCTGNMATTTWSTRPLAG*ECCRPGTCTSAASSGPTWATTR 351
S++P P + + AT + S P + TCTSAA++ + AT +
Sbjct: 621 SSSPSPAPSPDSATASRSASPTSARPATSSWTCTSAATASASPATAK 667
>05_01_0137 + 917533-917814,918080-918352
Length = 184
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/49 (40%), Positives = 24/49 (48%)
Frame = -2
Query: 389 SAASSGPTWATTRAWLKTFTARTPVPPSFTRSSQASRKGK*ICTTTPMP 243
+AAS+ PT ++ A T T P PPSF R S R CT P P
Sbjct: 48 AAASASPT-TSSPAPTTTTTTSPPPPPSFRRRSFCRR-----CTPPPPP 90
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 516 DLLLPCRVFSYAKTQVYWQYGDNNLV 439
D +L CRVF+YA TQ Y + G N L+
Sbjct: 350 DKMLQCRVFAYADTQRY-RLGPNYLM 374
>02_02_0652 - 12651163-12653210,12653327-12653627
Length = 782
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -2
Query: 392 TSAASSGPTWATTRAWLKTFTARTPVPPSFTRSSQASRKGK*ICTTTPMPAESFK 228
T ++ GP++ATT + K+ A T T++S AS TTP P+ K
Sbjct: 115 TKCSTLGPSYATTTSGAKSIPAATERVFPATKASLASSTSS-TTMTTPAPSTETK 168
>01_03_0289 -
14725832-14726114,14726216-14726298,14726432-14726545,
14727830-14728199,14728726-14728856,14728970-14729078,
14729257-14729378,14729522-14729625,14729849-14729953,
14730034-14730192,14730336-14730391,14730576-14730627,
14730725-14731031
Length = 664
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 340 KHLRQGHRFHLHLPGQA---KQVEKENKYVRPRQCPPKVS 230
+H R+ HR ++P A K+VEK +R R CP S
Sbjct: 355 RHSRRYHRVFDYIPPSATELKEVEKAGSDLRARTCPAMFS 394
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,878,746
Number of Sequences: 37544
Number of extensions: 379224
Number of successful extensions: 1183
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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