Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_K23
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 31 0.10
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 1.7
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi... 27 1.7
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 5.1
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 6.8
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 25 6.8
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 6.8
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 9.0
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 25 9.0
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 9.0
>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 31.1 bits (67), Expect = 0.10
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 281 TSLTRFLSGMALYSAFSCHRSLLLKLVPTIRSLHCITQTKDKNMKIKTG 427
T+ T+F S Y A + H SLL KL+ L+ + K K ++I G
Sbjct: 58 TNFTKF-SKFVYYLAITLHTSLLTKLIYCHADLYALQSIKYKRLRINNG 105
>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 116
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 279 FFSDPGQQLIMGIIARDLDHSDAEASITAGGIGFSYANIKLKS 151
F+S PG++ I I+ L S +GG G Y + +KS
Sbjct: 27 FYSTPGERRIKDILTEKLSPSSLRVIDVSGGCGSMY-QVAIKS 68
>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
Pin1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 175
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -2
Query: 335 GKKKPNITPSHSRNESKKYFFRIRDNN*LWVL*PAT*TTRMLKQVLLQEASVSLMPT 165
G KP I SR+ ++ YFF + LW PA LK+ + E S+ PT
Sbjct: 5 GLPKPWIVKI-SRSRNRPYFFNTETHESLWEP-PAATDMAALKKFIANELQESVTPT 59
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = -1
Query: 378 KDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEV 280
K+LIV TS ++ L +E+ +NAI KR++E+
Sbjct: 711 KELIVQTSSFQKELVEERERHNAI--SKRLQEI 741
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 133 NPDPRWAFQLYVGIRETDASCSNTCFSIRVV 225
N R F++ V + + +S SNTCFS+R V
Sbjct: 682 NESRRCVFEIPVTVMKP-SSISNTCFSLRDV 711
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 406 KYENQNGSELHFVVVFLK 459
K+ N +GS++HF +FLK
Sbjct: 387 KFSNIDGSDIHFRYLFLK 404
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/27 (29%), Positives = 19/27 (70%)
Frame = -3
Query: 127 TNLKSTRKKVIL*TIVFNQEVFYHFMF 47
+N+K ++K+++ + F+ EV+ F+F
Sbjct: 266 SNVKCSKKQILFSLLYFSSEVYLSFVF 292
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 263 PGSEKNTSLTRFLSGMALYSAFSCHRSL 346
PG T++ S +SA SCHR+L
Sbjct: 453 PGKTVATTVCHSSSSSGDFSALSCHRNL 480
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 253 QLLSRIRKKYFFDSFLEWDGVIFGF 327
Q S I +FD EWD V+ GF
Sbjct: 499 QKTSSILVDLYFDFKAEWDNVMLGF 523
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = -1
Query: 333 QEKAEYNAIPLKKRVKEVFFSDPGQQLIMGIIARDLDHSDAEASITAGGIGFSYANIKLK 154
+EKA+ I K+ +E F+ + + + I R + H D ASI ++ ++I+ K
Sbjct: 753 EEKAKEKGINAKQASQE-FYENTCMRAVNQSIGRAIRHRDDYASIILLDSRYNRSSIQRK 811
Query: 153 SP 148
P
Sbjct: 812 LP 813
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,918
Number of Sequences: 5004
Number of extensions: 41100
Number of successful extensions: 104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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