Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_K23
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522...    30   1.3  
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336...    29   1.7  
12_01_0517 - 4090727-4090990,4091074-4091344,4091477-4091556,409...    27   9.0  
03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508...    27   9.0  

>04_04_1624 -
           34849385-34849410,34849748-34851052,34852121-34852294,
           34852386-34852456,34852563-34852618,34853047-34853185,
           34853310-34853695,34853801-34853851,34853936-34854021,
           34854112-34854553,34856241-34856315,34856457-34856593,
           34856679-34856838,34856917-34857012,34857093-34857247,
           34857900-34858032
          Length = 1163

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = +2

Query: 206 ASASEWSRSRAIIPIISCCPGSEKNTSLTRFLSGMALYSAFSCHRSLLLKLVPTIRSLH 382
           ASA  W R+       S  P +E  T+++R L G  + S    +R+LLL LVP +R+LH
Sbjct: 794 ASARRWVRA-------SVAPYAEA-TNVSRVLVGDEVIS--QANRTLLLSLVPAMRNLH 842


>01_05_0078 +
           17931998-17932062,17933320-17933416,17933506-17933601,
           17933957-17933988,17935143-17935595,17935831-17935975,
           17936058-17936159,17937798-17937890,17939448-17939489,
           17940092-17940202,17940446-17940517,17940596-17940714,
           17940981-17941044,17941133-17942782
          Length = 1046

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 269 SEKNTSLTRFLSGMALYSAFSCHRSLLLKLVPTIRSLHCITQTKDKNMKIKTGAN 433
           S+    ++ F+ G   YS+F  H + + KLV  +  LHC  +  D  +    GAN
Sbjct: 331 SKLRVYISPFIYGTR-YSSFGRHFTKVEKLVEIVDKLHCYVEPGDTIVDFCCGAN 384


>12_01_0517 -
           4090727-4090990,4091074-4091344,4091477-4091556,
           4091649-4091818,4091925-4092063
          Length = 307

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 228 LDHSDAEASITAGGIGFSYANIKLK 154
           LD  D  AS+++GG  F+ AN+ L+
Sbjct: 269 LDVDDDSASVSSGGADFTAANVSLE 293


>03_05_0629 +
           26248960-26249236,26249766-26249894,26250291-26250847,
           26250933-26251250
          Length = 426

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 219 SDAEASITAGGIGFSYANIKLKSPXRVWIKLPT*NLH 109
           SDA AS+ AGG  F+ A  +  SP   ++ +P   LH
Sbjct: 46  SDAAASVAAGGSPFARATYRY-SPLLAYLLVPNSLLH 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,224,057
Number of Sequences: 37544
Number of extensions: 238655
Number of successful extensions: 560
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)