Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_K23
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   0.82 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   5.7  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +1

Query: 271 RKKYFFDSFLEWDGVIFGFFLPQKPLIKTSTYYKIFTLYNT---DQR*KYENQNGSELH 438
           RKK     + ++ G+++   LP    I +  Y +  T  N    ++R +  N+ G   H
Sbjct: 185 RKKVLLSVWWDYKGIVYFELLPPNRTINSVVYIEQLTKLNNAVEEKRPELTNRKGVVFH 243


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 53  EMIENFLIENYGLKYNFFTCRFQVGSLIQTLXGLFNFM 166
           ++++NF I++   K N   CR   G L+++  GL++ +
Sbjct: 590 KVLQNFDIKDKNKKVNVAGCRCVKGILLKS--GLYHVL 625


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,901
Number of Sequences: 438
Number of extensions: 3012
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)