Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_K09
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...   147   4e-37
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...   146   7e-37
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    29   0.16 
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    28   0.50 
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    27   1.2  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    26   1.5  
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    24   6.2  
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    24   8.2  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score =  147 bits (357), Expect = 4e-37
 Identities = 67/93 (72%), Positives = 81/93 (87%)
 Frame = -3

Query: 330 AKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYY 151
           +KK KK+ ++INS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPPLRKSE+EYY
Sbjct: 14  SKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSELEYY 73

Query: 150 ALLAKTGVHHYSGNNIELGTACGKYYRVCTLAI 52
           A+L++  VHHYSGNNI+LGTACGK +RV  LA+
Sbjct: 74  AMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAV 106


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score =  146 bits (355), Expect = 7e-37
 Identities = 67/96 (69%), Positives = 80/96 (83%)
 Frame = -3

Query: 336 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIE 157
           V  KK KK+ ++IN++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PPLRKSE+E
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELE 63

Query: 156 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAIT 49
           YYA+L+K  VHHY+G NI+LGTACGK +RV  LAIT
Sbjct: 64  YYAMLSKANVHHYAGTNIDLGTACGKLFRVGVLAIT 99


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 324 KQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 199
           ++KK I+     ++L   SGKYC G   T+  L++G  + ++
Sbjct: 279 QEKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEGAVETLL 318


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 27.9 bits (59), Expect = 0.50
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -3

Query: 216 KAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACG 82
           ++ +VI++K   P+RK  I+ +  L+  GVH    ++ EL   CG
Sbjct: 87  RSSIVILSKCFFPVRKDLIKIFGDLSSRGVHFL--DSPELANQCG 129


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 243 ACILSNIFPISSPRQ--GGS*LTRWSFSVSLLQPFWKQIH 356
           ACI  N+ PI+  +       L    F+V LL+ +W Q+H
Sbjct: 178 ACIEKNLTPITWDKNLVENHKLADRDFAVGLLKNYWSQLH 217


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -3

Query: 345 SKMVAAKK-QKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 175
           +K +A KK  KK ++++        K      G K+ +K +R+G+  LVI+A +  P+
Sbjct: 29  AKPLAPKKLNKKMMKTVKK----ASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPM 82


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 131 PVLARRA*YSISDFLSGGAFLAMITSFAL 217
           P+L ++   ++SDF+S  A L  +T FA+
Sbjct: 18  PLLFQKRSSNVSDFISFNASLPNVTIFAM 46


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 131 PVLARRA*YSISDFLSGGAFLAMITSFAL 217
           P L ++   +ISDF+S  A L  +T FA+
Sbjct: 18  PFLFQKRSSNISDFISFNASLPNVTIFAM 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,436,507
Number of Sequences: 5004
Number of extensions: 24971
Number of successful extensions: 57
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)